STARS Implementation Guide
0.5.0 - release

STARS Implementation Guide - Downloaded Version 0.5.0 See the Directory of published versions

## Profile - DiagnosticReport

Within FHIR receiving results from a testing laboratory is known as a DiagnosticReport. Changes have been made to the standard R5 DiagnosticReport Profile to better accomodate our individual situation and testing arrangements. You can view the details regarding the customised profile here CsiroStarsDiagnosticReportProfile.

### DiagnosticReport CSV Model

List of fields that exist in a DiagnosticReport CSV file.

### Field List for CSV model

Below is the field list as specified for the CSV file format. All required fields must be present within each row of the file.

#### Required Fields

Name (Required) | Definition | Value
--- | --- | ---
messageheader_event | Message type: Must be "ServiceRequest" for sending specimen | ValueSet: MessageTypeValueSet
messageheader_receiver | receiver node | node username
messageheader_sender | sender node | node username or senders username
messageheader_author_identifier |  | stars username
messageheader_author_fullname |  | Free-text
messageheader_author_email |  | Free-text
diagnosticreport_identifier |  | Free-text
diagnosticreport_status |  | ValueSet: []
diagnosticreport_issued |  | DateTime
diagnosticreport_resultsinterpreter_fullname |  | Free-text
observation_analysis_identifier |  | ValueSet: AnalysisValueSet
observation_sender_identifier | Senders sample reference. ie the lab that performed the testing. | Free-text
observation_status |  | ValueSet: []
observation_code |  | ValueSet: []

#### Optional Fields

Name (Optional) | Definition | Value
--- | --- | ---
messageheader_id | Message Identifier: UUID | Free-text (UUID)
diagnosticreport_requisition | Which submissions or job requisitions the report relates to. | Free-text
diagnosticreport_media_title | Filename of the attached report. | Free-text
diagnosticreport_media_docstatus | Status of the attached report. | ValueSet: CompositionStatus
diagnosticreport_conclusion |  | Free-text
observation_receiver_identifier | Receivers sample reference. ie the lab that submitted the samples for testing. | Free-text
observation_issued | Timestamp when the test was authorised | DateTime
observation_effective | Timestamp when the test was completed | DateTime
observation_dataabsentreason | "Reason for the test not being complted. "Insufficient sample size received to complete the test" | Free-text
observation_interpretation |  | ValueSet: []
observation_note |  | Free-text
observation_value | Result value. Either string or decimal | Free-text
observation_valuequantity_unit | Display name of the unit's code. eg "Cycle Threshold". If value is decimal then unit may be specified | ValueSet: UcumValueSet
observation_valuequantity_comparator | If value is decimal then comparator may be specified | ValueSet: ComparatorValueSet

### Mapping DiagnosticReport from Legacy ResultSend

New Field | Old Field
--- | ---
messageheader_id | MESSAGE.STARS_ID
messageheader_event | MESSAGE.MESSAGE_TYPE
messageheader_receiver | MESSAGE.DEST_NODE
messageheader_sender | MESSAGE.SOURCE_NODE
messageheader_author_identifier | MESSAGE.USER_ID
messageheader_author_fullname | (new)
messageheader_author_email | MESSAGE.EMAIL
diagnosticreport_identifier |
diagnosticreport_requisition | JOB.CUST_JOB_REF
diagnosticreport_status |
diagnosticreport_issued | MESSAGE.DATE_SENT
diagnosticreport_resultsinterpreter_fullname | JOB.REPORTED_BY
diagnosticreport_media_title | OBJECT.FILE_NAME
diagnosticreport_media_docstatus | (new)
diagnosticreport_conclusion | JOB.SUMMARY
observation_analysis_identifier | RESULT.TEST_ORDER_NUMBER
observation_sender_identifier | SAMPLE.TESTING_JOB_SAMP_REF
observation_receiver_identifier | SAMPLE.CUST_JOB_SAMP_REF
observation_status | (new)
observation_issued | (new)
observation_code | RESULT.TEST_REF
observation_effective | TEST.DATE_TESTED
observation_dataabsentreason | (new)
observation_interpretation | (new)
observation_note | TEST.TEST_SUMMARY
observation_value | RESULT.VALUE
observation_valuequantity_unit | (new)
observation_valuequantity_comparator | (new)

### DiagnosticReport Basic Model (Intermediary Format)

This data structure is used internally as an intermediary format when converting between CSV and FHIR messages and may help to understand the structure of the complete FHIR Profiles. See the Artifact Profile List for more detailed information.

DiagnosticReport basic model used to convert between CSV and FHIR.