STARS Implementation Guide
0.5.1 - release

STARS Implementation Guide - Downloaded Version 0.5.1 See the Directory of published versions

## Example Bundle: bundle-example-cat3-cow-diagnosticreport

Bundle aa4dd75c-673b-4263-8c70-6e92fef4a48b of type message

Entry 1 - fullUrl = urn:uuid:43f763f5-e640-4038-82c9-3ebaa8ee594c

Resource MessageHeader:

> Profile: CSIRO STARS MessageHeader Profile

> event: STARS Message Type DiagnosticReport: DiagnosticReport

> ### Destinations

> - | Receiver
> * | Practitioner NODE ACDP01

> sender: Practitioner NODE ACDP01

> ### Sources

> - | Software | Version
> * | sushi and ig-publisher | 1.2.3.4

> focus: Diagnostic Report for 'Laboratory report' for 'Unspecified Subject'

Entry 2 - fullUrl = urn:uuid:b669bffc-2e2a-402c-93d1-f10e6136f496

Resource DiagnosticReport:

> Profile: CSIRO STARS DiagnosticReport Profile

> ## Laboratory report

> Reported | 2022-11-29 00:00:00+0000
> Identifier | 22-00002

> Report Details

> Code | Value | Flags | Note | When For | Reported
> Foot and Mouth Disease Virus Isolation | Not detected | Final, Not detected | The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV. | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Foot and Mouth Disease Virus Isolation | Not detected | Final, Not detected | The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV. | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Vesicular Stomatitis Virus Isolation | Not detected | Final, Not detected |  | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Vesicular Stomatitis Virus Isolation | Not detected | Final, Not detected |  | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay | 45 Cycle Threshold | Final, Negative |  | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay | 45 Cycle Threshold | Final, Negative |  | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay | 45 Cycle Threshold | Final, Negative |  | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay | 45 Cycle Threshold | Final, Negative |  | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay | 45 Cycle Threshold | Final, Negative | NATA accreditation does not cover the performance of this service. | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay | 45 Cycle Threshold | Final, Negative | NATA accreditation does not cover the performance of this service. | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay | 45 Cycle Threshold | Final, Negative | NATA accreditation does not cover the performance of this service. | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay | 45 Cycle Threshold | Final, Negative | NATA accreditation does not cover the performance of this service. | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Foot and Mouth Disease Serotype A: C ELISA for the Detection of Antibodies | Not detected | Final, Not detected |  | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Foot and Mouth Disease Serotype Asia 1: C ELISA for Detection of Antibodies | Not detected | Final, Not detected |  | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Foot and Mouth Disease Serotype O: C ELISA for the Detection of Antibodies | Not detected | Final, Not detected |  | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Vesiculovirus Serum Neutralisation Test for Antibody for Serotype Indiana | Not detected | Final, Not detected |  | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000
> Vesiculovirus Serum Neutralisation Test for Antibody for Serotype New Jersey | Not detected | Final, Not detected |  | 2022-11-29 10:30:10+1000 | 2022-11-29 10:30:10+1000

> Please note that insufficient sample volume was received to complete the FMD Antigen capture ELISA. In cases where vesicular epithelium is not available for submission, a minimum sample volume of 3 mL is required for all vesicular disease exclusion testing.

Entry 3 - fullUrl = urn:uuid:fcbef5c9-e7b9-4133-92aa-1e5f2c798c48

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test3-fmdviso

> status: Final

> code: Foot and Mouth Disease Virus Isolation

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: Not detected

> interpretation: Not detected

> note:

> > The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.

Entry 4 - fullUrl = urn:uuid:20aceb62-6e6f-4a94-a432-b18b630921d9

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test4-fmdviso

> status: Final

> code: Foot and Mouth Disease Virus Isolation

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: Not detected

> interpretation: Not detected

> note:

> > The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.

Entry 5 - fullUrl = urn:uuid:a39356e2-9e8b-4966-b2a3-a519db3112ad

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test3-vsviso

> status: Final

> code: Vesicular Stomatitis Virus Isolation

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: Not detected

> interpretation: Not detected

Entry 6 - fullUrl = urn:uuid:647c4bb8-6baa-46ad-ac87-ee956d331b9d

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test4-vsviso

> status: Final

> code: Vesicular Stomatitis Virus Isolation

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: Not detected

> interpretation: Not detected

Entry 7 - fullUrl = urn:uuid:95481e7c-2bdf-4ac9-bd59-ff22ed962b74

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test1-fmdvmptqm

> status: Final

> code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: 45 Cycle Threshold

> interpretation: Negative

Entry 8 - fullUrl = urn:uuid:5606726e-583f-4da4-a480-34bd43fcd82d

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test2-fmdvmptqm

> status: Final

> code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: 45 Cycle Threshold

> interpretation: Negative

Entry 9 - fullUrl = urn:uuid:efc6dff0-6d0d-4781-ba75-36f60fb88475

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test3-fmdvmptqm

> status: Final

> code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: 45 Cycle Threshold

> interpretation: Negative

Entry 10 - fullUrl = urn:uuid:d21aec15-b559-41cd-9422-6bab3f80fda2

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test4-fmdvmptqm

> status: Final

> code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: 45 Cycle Threshold

> interpretation: Negative

Entry 11 - fullUrl = urn:uuid:798660b3-84e3-4a9c-8970-800117eadb64

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test1-vsvtqmmp

> status: Final

> code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: 45 Cycle Threshold

> interpretation: Negative

> note:

> > NATA accreditation does not cover the performance of this service.

Entry 12 - fullUrl = urn:uuid:c8251127-30f3-4363-929f-6763ce4f9528

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test2-vsvtqmmp

> status: Final

> code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: 45 Cycle Threshold

> interpretation: Negative

> note:

> > NATA accreditation does not cover the performance of this service.

Entry 13 - fullUrl = urn:uuid:388b33dd-fa80-487e-a5bd-d55740198f23

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test3-vsvtqmmp

> status: Final

> code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: 45 Cycle Threshold

> interpretation: Negative

> note:

> > NATA accreditation does not cover the performance of this service.

Entry 14 - fullUrl = urn:uuid:76f99928-e324-4c8f-86db-1fdbb2803d23

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test4-vsvtqmmp

> status: Final

> code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: 45 Cycle Threshold

> interpretation: Negative

> note:

> > NATA accreditation does not cover the performance of this service.

Entry 15 - fullUrl = urn:uuid:87505ee8-9b42-4106-ac09-d67082b7b7fc

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test1-fmdcea

> status: Final

> code: Foot and Mouth Disease Serotype A: C ELISA for the Detection of Antibodies

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: Not detected

> interpretation: Not detected

Entry 16 - fullUrl = urn:uuid:4b2612f6-4ce0-4d20-b27c-a57ccfe3ca78

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test1-fmdceas1

> status: Final

> code: Foot and Mouth Disease Serotype Asia 1: C ELISA for Detection of Antibodies

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: Not detected

> interpretation: Not detected

Entry 17 - fullUrl = urn:uuid:bff818b2-3a93-497a-b141-f79bc00ee3ea

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test1-fmdce0

> status: Final

> code: Foot and Mouth Disease Serotype O: C ELISA for the Detection of Antibodies

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: Not detected

> interpretation: Not detected

Entry 18 - fullUrl = urn:uuid:455664c3-066a-46f0-8bba-6912876dd4e1

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test1-vsvsntin

> status: Final

> code: Vesiculovirus Serum Neutralisation Test for Antibody for Serotype Indiana

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: Not detected

> interpretation: Not detected

Entry 19 - fullUrl = urn:uuid:b52a62ea-051f-434f-8bfb-4ccf14bfe348

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: test1-vsvsntnj

> status: Final

> code: Vesiculovirus Serum Neutralisation Test for Antibody for Serotype New Jersey

> effective: 2022-11-29 10:30:10+1000

> issued: 2022-11-29 10:30:10+1000

> value: Not detected

> interpretation: Not detected

Entry 20 - fullUrl = urn:uuid:111333e4-54f3-4554-bbd8-12a828111222

Resource Practitioner:

> Profile: CSIRO STARS Practitioner Profile

> identifier: acdp01

> name: NODE ACDP01

Entry 21 - fullUrl = urn:uuid:111222e4-54f3-4554-bbd8-12a828111222

Resource Practitioner:

> Profile: CSIRO STARS Practitioner Profile

> identifier: acdp01

> name: NODE ACDP01

Entry 22 - fullUrl = urn:uuid:111444e4-54f3-4554-bbd8-12a828111333

Resource Practitioner:

> Profile: CSIRO STARS Practitioner Profile

> name: John Smith - Duty Vet