STARS Implementation Guide
0.5.1 - release

STARS Implementation Guide - Downloaded Version 0.5.1 See the Directory of published versions

## Example Bundle: bundle-qa-diagnosticreport-complete

Bundle zzzzzzzz-bbbb-zzzz-zzzz-zzzzzzzzaaaa of type message

Entry 1 - fullUrl = urn:uuid:111163f5-e640-4038-82c9-3eba28ee594c

Resource MessageHeader:

> Profile: CSIRO STARS MessageHeader Profile

> event: STARS Message Type DiagnosticReport: DiagnosticReport

> ### Destinations

> - | Receiver
> * | Practitioner NODE ACDP01

> sender: Practitioner Jane Doe

> author: Practitioner Conor Vahland

> ### Sources

> - | Software | Version
> * | sushi and ig-publisher | 1.2.3.4

> focus: Diagnostic Report for 'Laboratory report' for 'Unspecified Subject'

Entry 2 - fullUrl = urn:uuid:b669bf44-2e2a-402c-13d1-f10e6136f496

Resource DiagnosticReport:

> Profile: CSIRO STARS DiagnosticReport Profile

> ## Laboratory report

> Reported | 2022-11-29 00:00:00+1100
> Identifier | 22-00002

> Report Details

> Code | Value | Flags | Note | When For | Reported
> Foot and Mouth Disease Virus Isolation | Not detected | Final, Not detected | The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV. | 2022-11-29 10:30:10+1100 | 2022-11-29 10:30:10+1100
> Foot and Mouth Disease Virus Isolation | Error: insufficient sample size | Final, Not detected | The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV. | 2022-11-29 10:30:10+1100 | 2022-11-29 10:30:10+1100
> Foot and Mouth Disease Virus Isolation | Not detected | Final, Not detected | The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV. | 2022-11-29 10:30:10+1100 | 2022-11-29 10:30:10+1100
> Vesicular Stomatitis Virus Isolation | Not detected | Final, Not detected |  | 2022-11-29 10:30:10+1100 | 2022-11-29 10:30:10+1100
> Vesicular Stomatitis Virus Isolation | Not detected | Final, Not detected |  | 2022-11-29 10:30:10+1100 | 2022-11-29 10:30:10+1100
> Vesicular Stomatitis Virus Isolation | Not detected | Final, Not detected |  | 2022-11-29 10:30:10+1100 | 2022-11-29 10:30:10+1100
> Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay | >45 Cycle Threshold | Final, Negative |  | 2022-11-29 10:30:10+1100 | 2022-11-29 10:30:10+1100
> Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay | 45 Cycle Threshold | Final, Negative |  | 2022-11-29 10:30:10+1100 | 2022-11-29 10:30:10+1100
> Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay | 45 Cycle Threshold | Final, Negative |  | 2022-11-29 10:30:10+1100 | 2022-11-29 10:30:10+1100
> Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay | 45 Cycle Threshold | Final, Negative | NATA accreditation does not cover the performance of this service. | 2022-11-29 10:30:10+1100 | 2022-11-29 10:30:10+1100
> Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay | 45 Cycle Threshold | Final, Negative | NATA accreditation does not cover the performance of this service. | 2022-11-29 10:30:10+1100 | 2022-11-29 10:30:10+1100
> Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay | 45 Cycle Threshold | Final, Negative | NATA accreditation does not cover the performance of this service. | 2022-11-29 10:30:10+1100 | 2022-11-29 10:30:10+1100

> Please note that insufficient sample volume was received to complete the FMD Antigen capture ELISA. In cases where vesicular epithelium is not available for submission, a minimum sample volume of 3 mL is required for all vesicular disease exclusion testing.

Entry 3 - fullUrl = urn:uuid:111ef5c9-e7b9-4133-92aa-1e5f2c798c48

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: Analysis Result Identifier/234gdf766, Sender Sample Identifier/22-00002-0001, Receiver Sample Identifier/AS-22-3437-0001

> status: Final

> code: Foot and Mouth Disease Virus Isolation

> effective: 2022-11-29 10:30:10+1100

> issued: 2022-11-29 10:30:10+1100

> value: Not detected

> interpretation: Not detected

> note:

> > The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.

Entry 4 - fullUrl = urn:uuid:222ef5c9-e7b9-4133-92aa-1e5f2c798c48

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: Analysis Result Identifier/2354xcv78766, Sender Sample Identifier/22-00002-0002, Receiver Sample Identifier/AS-22-3437-0002

> status: Final

> code: Foot and Mouth Disease Virus Isolation

> effective: 2022-11-29 10:30:10+1100

> issued: 2022-11-29 10:30:10+1100

> dataAbsentReason: insufficient sample size

> interpretation: Not detected

> note:

> > The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.

Entry 5 - fullUrl = urn:uuid:333ef5c9-e7b9-4133-92aa-1e5f2c798c48

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: Analysis Result Identifier/23ddg78766, Sender Sample Identifier/22-00002-0003, Receiver Sample Identifier/AS-22-3437-0003

> status: Final

> code: Foot and Mouth Disease Virus Isolation

> effective: 2022-11-29 10:30:10+1100

> issued: 2022-11-29 10:30:10+1100

> value: Not detected

> interpretation: Not detected

> note:

> > The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.

Entry 6 - fullUrl = urn:uuid:111356e2-9e8b-4966-b2a3-a519db3112ad

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: Analysis Result Identifier/2342h8766, Sender Sample Identifier/22-00002-0001, Receiver Sample Identifier/AS-22-3437-0001

> status: Final

> code: Vesicular Stomatitis Virus Isolation

> effective: 2022-11-29 10:30:10+1100

> issued: 2022-11-29 10:30:10+1100

> value: Not detected

> interpretation: Not detected

Entry 7 - fullUrl = urn:uuid:222356e2-9e8b-4966-b2a3-a519db3112ad

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: Analysis Result Identifier/23s378766, Sender Sample Identifier/22-00002-0002, Receiver Sample Identifier/AS-22-3437-0002

> status: Final

> code: Vesicular Stomatitis Virus Isolation

> effective: 2022-11-29 10:30:10+1100

> issued: 2022-11-29 10:30:10+1100

> value: Not detected

> interpretation: Not detected

Entry 8 - fullUrl = urn:uuid:333356e2-9e8b-4966-b2a3-a519db3112ad

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: Analysis Result Identifier/234237try66, Sender Sample Identifier/22-00002-0003, Receiver Sample Identifier/AS-22-3437-0003

> status: Final

> code: Vesicular Stomatitis Virus Isolation

> effective: 2022-11-29 10:30:10+1100

> issued: 2022-11-29 10:30:10+1100

> value: Not detected

> interpretation: Not detected

Entry 9 - fullUrl = urn:uuid:11181e7c-2bdf-4ac9-bd59-ff22ed962b74

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: Analysis Result Identifier/23423asd8766, Sender Sample Identifier/22-00002-0004, Receiver Sample Identifier/AS-22-3437-0004

> status: Final

> code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay

> effective: 2022-11-29 10:30:10+1100

> issued: 2022-11-29 10:30:10+1100

> value: >45 Cycle Threshold

> interpretation: Negative

Entry 10 - fullUrl = urn:uuid:22281e7c-2bdf-4ac9-bd59-ff22ed962b74

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: Analysis Result Identifier/234237hgj66, Sender Sample Identifier/22-00002-0005, Receiver Sample Identifier/AS-22-3437-0005

> status: Final

> code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay

> effective: 2022-11-29 10:30:10+1100

> issued: 2022-11-29 10:30:10+1100

> value: 45 Cycle Threshold

> interpretation: Negative

Entry 11 - fullUrl = urn:uuid:33381e7c-2bdf-4ac9-bd59-ff22ed962b74

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: Analysis Result Identifier/234gfh378766, Sender Sample Identifier/22-00002-0006, Receiver Sample Identifier/AS-22-3437-0006

> status: Final

> code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay

> effective: 2022-11-29 10:30:10+1100

> issued: 2022-11-29 10:30:10+1100

> value: 45 Cycle Threshold

> interpretation: Negative

Entry 12 - fullUrl = urn:uuid:111660b3-84e3-4a9c-8970-800117eadb64

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: Analysis Result Identifier/2342324766, Sender Sample Identifier/22-00002-0004, Receiver Sample Identifier/AS-22-3437-0004

> status: Final

> code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay

> effective: 2022-11-29 10:30:10+1100

> issued: 2022-11-29 10:30:10+1100

> value: 45 Cycle Threshold

> interpretation: Negative

> note:

> > NATA accreditation does not cover the performance of this service.

Entry 13 - fullUrl = urn:uuid:222660b3-84e3-4a9c-8970-800117eadb64

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: Analysis Result Identifier/234268766, Sender Sample Identifier/22-00002-0005, Receiver Sample Identifier/AS-22-3437-0005

> status: Final

> code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay

> effective: 2022-11-29 10:30:10+1100

> issued: 2022-11-29 10:30:10+1100

> value: 45 Cycle Threshold

> interpretation: Negative

> note:

> > NATA accreditation does not cover the performance of this service.

Entry 14 - fullUrl = urn:uuid:333660b3-84e3-4a9c-8970-800117eadb64

Resource Observation:

> Profile: CSIRO STARS Observation Result Profile

> identifier: Analysis Result Identifier/2345478766, Sender Sample Identifier/22-00002-0006, Receiver Sample Identifier/AS-22-3437-0006

> status: Final

> code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay

> effective: 2022-11-29 10:30:10+1100

> issued: 2022-11-29 10:30:10+1100

> value: 45 Cycle Threshold

> interpretation: Negative

> note:

> > NATA accreditation does not cover the performance of this service.

Entry 15 - fullUrl = urn:uuid:111222e4-54f3-4554-bbd8-12a828111222

Resource Practitioner:

> Profile: CSIRO STARS Practitioner Profile

> identifier: stars

> name: stars

Entry 16 - fullUrl = urn:uuid:111444e4-54f3-4554-bbd8-12a828111222

Resource Practitioner:

> Profile: CSIRO STARS Practitioner Profile

> identifier: acdp99

> name: acdp99

Entry 17 - fullUrl = urn:uuid:111227e4-54f3-4554-bbd8-12a828111222

Resource Practitioner:

> Profile: CSIRO STARS Practitioner Profile

> identifier: vah004

> name: Conor Vahland

> telecom: conor.vahland@csiro.au

Entry 18 - fullUrl = urn:uuid:111444e4-54f3-4554-bbd8-12a824567222

Resource Practitioner:

> Profile: CSIRO STARS Practitioner Profile

> name: Mark Ford

Entry 19 - fullUrl = urn:uuid:890425b3-84e3-4a9c-8970-800117ea2345

Resource DocumentReference:

> identifier: 23-00355-F1.pdf

> status: Current

> docStatus: Final

> > content

> > ### Attachments

> > - | ContentType | Data | Hash | Title | Creation | Pages
> > * | application/pdf | (base64 data - 47,660 base64 chars) | `12krMxiAe3yBlGE7XIQi9BRxCpI=` | 23-00355-F1.pdf | 2020-02-01 14:42:43+0000 | 4