STARS Implementation Guide
0.5.1 - release
This page is part of the Csiro Stars (v0.5.1: Release) based on FHIR (HL7® FHIR® Standard) v5.0.0. This is the current published version. For a full list of available versions, see the Directory of published versions
Bundle zzzzzzzz-bbbb-zzzz-zzzz-zzzzzzzzaaaa of type message
Entry 1 - fullUrl = urn:uuid:111163f5-e640-4038-82c9-3eba28ee594c
Resource MessageHeader:
Profile: CSIRO STARS MessageHeader Profile
event: STARS Message Type DiagnosticReport: DiagnosticReport
Destinations
Receiver Practitioner NODE ACDP01 sender: Practitioner Jane Doe
author: Practitioner Conor Vahland
Sources
Software Version sushi and ig-publisher 1.2.3.4 focus: Diagnostic Report for 'Laboratory report' for 'Unspecified Subject'
Entry 2 - fullUrl = urn:uuid:b669bf44-2e2a-402c-13d1-f10e6136f496
Resource DiagnosticReport:
Profile: CSIRO STARS DiagnosticReport Profile
Laboratory report
Reported 2022-11-29 00:00:00+1100 Identifier 22-00002 Report Details
Code Value Flags Note When For Reported Foot and Mouth Disease Virus Isolation Not detected Final, Not detected The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.
2022-11-29 10:30:10+1100 2022-11-29 10:30:10+1100 Foot and Mouth Disease Virus Isolation Error: insufficient sample size Final, Not detected The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.
2022-11-29 10:30:10+1100 2022-11-29 10:30:10+1100 Foot and Mouth Disease Virus Isolation Not detected Final, Not detected The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.
2022-11-29 10:30:10+1100 2022-11-29 10:30:10+1100 Vesicular Stomatitis Virus Isolation Not detected Final, Not detected 2022-11-29 10:30:10+1100 2022-11-29 10:30:10+1100 Vesicular Stomatitis Virus Isolation Not detected Final, Not detected 2022-11-29 10:30:10+1100 2022-11-29 10:30:10+1100 Vesicular Stomatitis Virus Isolation Not detected Final, Not detected 2022-11-29 10:30:10+1100 2022-11-29 10:30:10+1100 Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay >45 Cycle Threshold Final, Negative 2022-11-29 10:30:10+1100 2022-11-29 10:30:10+1100 Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay 45 Cycle Threshold Final, Negative 2022-11-29 10:30:10+1100 2022-11-29 10:30:10+1100 Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay 45 Cycle Threshold Final, Negative 2022-11-29 10:30:10+1100 2022-11-29 10:30:10+1100 Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay 45 Cycle Threshold Final, Negative NATA accreditation does not cover the performance of this service.
2022-11-29 10:30:10+1100 2022-11-29 10:30:10+1100 Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay 45 Cycle Threshold Final, Negative NATA accreditation does not cover the performance of this service.
2022-11-29 10:30:10+1100 2022-11-29 10:30:10+1100 Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay 45 Cycle Threshold Final, Negative NATA accreditation does not cover the performance of this service.
2022-11-29 10:30:10+1100 2022-11-29 10:30:10+1100 Please note that insufficient sample volume was received to complete the FMD Antigen capture ELISA. In cases where vesicular epithelium is not available for submission, a minimum sample volume of 3 mL is required for all vesicular disease exclusion testing.
Entry 3 - fullUrl = urn:uuid:111ef5c9-e7b9-4133-92aa-1e5f2c798c48
Resource Observation:
identifier: Analysis Result Identifier/234gdf766, Sender Sample Identifier/22-00002-0001, Receiver Sample Identifier/AS-22-3437-0001
status: Final
code: Foot and Mouth Disease Virus Isolation
effective: 2022-11-29 10:30:10+1100
issued: 2022-11-29 10:30:10+1100
value: Not detected
interpretation: Not detected
note:
The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.
Entry 4 - fullUrl = urn:uuid:222ef5c9-e7b9-4133-92aa-1e5f2c798c48
Resource Observation:
identifier: Analysis Result Identifier/2354xcv78766, Sender Sample Identifier/22-00002-0002, Receiver Sample Identifier/AS-22-3437-0002
status: Final
code: Foot and Mouth Disease Virus Isolation
effective: 2022-11-29 10:30:10+1100
issued: 2022-11-29 10:30:10+1100
dataAbsentReason: insufficient sample size
interpretation: Not detected
note:
The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.
Entry 5 - fullUrl = urn:uuid:333ef5c9-e7b9-4133-92aa-1e5f2c798c48
Resource Observation:
identifier: Analysis Result Identifier/23ddg78766, Sender Sample Identifier/22-00002-0003, Receiver Sample Identifier/AS-22-3437-0003
status: Final
code: Foot and Mouth Disease Virus Isolation
effective: 2022-11-29 10:30:10+1100
issued: 2022-11-29 10:30:10+1100
value: Not detected
interpretation: Not detected
note:
The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.
Entry 6 - fullUrl = urn:uuid:111356e2-9e8b-4966-b2a3-a519db3112ad
Resource Observation:
identifier: Analysis Result Identifier/2342h8766, Sender Sample Identifier/22-00002-0001, Receiver Sample Identifier/AS-22-3437-0001
status: Final
code: Vesicular Stomatitis Virus Isolation
effective: 2022-11-29 10:30:10+1100
issued: 2022-11-29 10:30:10+1100
value: Not detected
interpretation: Not detected
Entry 7 - fullUrl = urn:uuid:222356e2-9e8b-4966-b2a3-a519db3112ad
Resource Observation:
identifier: Analysis Result Identifier/23s378766, Sender Sample Identifier/22-00002-0002, Receiver Sample Identifier/AS-22-3437-0002
status: Final
code: Vesicular Stomatitis Virus Isolation
effective: 2022-11-29 10:30:10+1100
issued: 2022-11-29 10:30:10+1100
value: Not detected
interpretation: Not detected
Entry 8 - fullUrl = urn:uuid:333356e2-9e8b-4966-b2a3-a519db3112ad
Resource Observation:
identifier: Analysis Result Identifier/234237try66, Sender Sample Identifier/22-00002-0003, Receiver Sample Identifier/AS-22-3437-0003
status: Final
code: Vesicular Stomatitis Virus Isolation
effective: 2022-11-29 10:30:10+1100
issued: 2022-11-29 10:30:10+1100
value: Not detected
interpretation: Not detected
Entry 9 - fullUrl = urn:uuid:11181e7c-2bdf-4ac9-bd59-ff22ed962b74
Resource Observation:
identifier: Analysis Result Identifier/23423asd8766, Sender Sample Identifier/22-00002-0004, Receiver Sample Identifier/AS-22-3437-0004
status: Final
code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay
effective: 2022-11-29 10:30:10+1100
issued: 2022-11-29 10:30:10+1100
value: >45 Cycle Threshold
interpretation: Negative
Entry 10 - fullUrl = urn:uuid:22281e7c-2bdf-4ac9-bd59-ff22ed962b74
Resource Observation:
identifier: Analysis Result Identifier/234237hgj66, Sender Sample Identifier/22-00002-0005, Receiver Sample Identifier/AS-22-3437-0005
status: Final
code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay
effective: 2022-11-29 10:30:10+1100
issued: 2022-11-29 10:30:10+1100
value: 45 Cycle Threshold
interpretation: Negative
Entry 11 - fullUrl = urn:uuid:33381e7c-2bdf-4ac9-bd59-ff22ed962b74
Resource Observation:
identifier: Analysis Result Identifier/234gfh378766, Sender Sample Identifier/22-00002-0006, Receiver Sample Identifier/AS-22-3437-0006
status: Final
code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay
effective: 2022-11-29 10:30:10+1100
issued: 2022-11-29 10:30:10+1100
value: 45 Cycle Threshold
interpretation: Negative
Entry 12 - fullUrl = urn:uuid:111660b3-84e3-4a9c-8970-800117eadb64
Resource Observation:
identifier: Analysis Result Identifier/2342324766, Sender Sample Identifier/22-00002-0004, Receiver Sample Identifier/AS-22-3437-0004
status: Final
code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay
effective: 2022-11-29 10:30:10+1100
issued: 2022-11-29 10:30:10+1100
value: 45 Cycle Threshold
interpretation: Negative
note:
NATA accreditation does not cover the performance of this service.
Entry 13 - fullUrl = urn:uuid:222660b3-84e3-4a9c-8970-800117eadb64
Resource Observation:
identifier: Analysis Result Identifier/234268766, Sender Sample Identifier/22-00002-0005, Receiver Sample Identifier/AS-22-3437-0005
status: Final
code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay
effective: 2022-11-29 10:30:10+1100
issued: 2022-11-29 10:30:10+1100
value: 45 Cycle Threshold
interpretation: Negative
note:
NATA accreditation does not cover the performance of this service.
Entry 14 - fullUrl = urn:uuid:333660b3-84e3-4a9c-8970-800117eadb64
Resource Observation:
identifier: Analysis Result Identifier/2345478766, Sender Sample Identifier/22-00002-0006, Receiver Sample Identifier/AS-22-3437-0006
status: Final
code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay
effective: 2022-11-29 10:30:10+1100
issued: 2022-11-29 10:30:10+1100
value: 45 Cycle Threshold
interpretation: Negative
note:
NATA accreditation does not cover the performance of this service.
Entry 15 - fullUrl = urn:uuid:111222e4-54f3-4554-bbd8-12a828111222
Resource Practitioner:
Profile: CSIRO STARS Practitioner Profile
identifier: stars
name: stars
Entry 16 - fullUrl = urn:uuid:111444e4-54f3-4554-bbd8-12a828111222
Resource Practitioner:
Profile: CSIRO STARS Practitioner Profile
identifier: acdp99
name: acdp99
Entry 17 - fullUrl = urn:uuid:111227e4-54f3-4554-bbd8-12a828111222
Resource Practitioner:
Profile: CSIRO STARS Practitioner Profile
identifier: vah004
name: Conor Vahland
telecom: conor.vahland@csiro.au
Entry 18 - fullUrl = urn:uuid:111444e4-54f3-4554-bbd8-12a824567222
Resource Practitioner:
Profile: CSIRO STARS Practitioner Profile
name: Mark Ford
Entry 19 - fullUrl = urn:uuid:890425b3-84e3-4a9c-8970-800117ea2345
Resource DocumentReference:
identifier: 23-00355-F1.pdf
status: Current
docStatus: Final
content
Attachments
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