STARS Implementation Guide
0.3.0 - ci-build
This page is part of the Csiro Stars (v0.3.0: Releases Draft) based on FHIR (HL7® FHIR® Standard) v5.0.0. No current official version has been published yet. For a full list of available versions, see the Directory of published versions
Official URL: https://starsapi.csiro.au/fhir-ig/stars/StructureDefinition/csiro-stars-specimen | Version: 0.3.0 | |||
Active as of 2025-06-03 | Computable Name: CsiroStarsSpecimenProfile |
A specimen / sample
Usages:
Description of Profiles, Differentials, Snapshots and how the different presentations work.
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
---|---|---|---|---|
![]() ![]() |
0..* | Specimen | Sample for analysis | |
![]() ![]() ![]() |
?!Σ | 0..1 | uri | A set of rules under which this content was created |
![]() ![]() ![]() |
0..* | Resource | Contained, inline Resources | |
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?!Σ | 0..* | Extension | Extensions that cannot be ignored |
![]() ![]() ![]() |
SΣ | 0..* | Identifier | External Identifier |
![]() ![]() ![]() |
?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. |
![]() ![]() ![]() |
SΣ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type Value Set (required) |
![]() ![]() ![]() |
Σ | 0..1 | Reference(CSIRO STARS Patient Profile | Group | Location) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device |
![]() ![]() ![]() |
0..* | Reference(CSIRO STARS Specimen Profile) | Specimen from which this specimen originated | |
![]() ![]() ![]() |
0..* | Reference(CSIRO STARS ServiceRequest Profile) | Why the specimen was collected | |
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0..1 | BackboneElement | Collection details | |
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0..* | Extension | Extension Slice: Unordered, Open by value:url | |
![]() ![]() ![]() ![]() ![]() |
S | 0..1 | Reference(CSIRO STARS Location Profile) | Specimen Collection Location URL: https://starsapi.csiro.au/fhir-ig/stars/StructureDefinition/specimen-collection-location |
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() |
Σ | 0..1 | Reference(CSIRO STARS Practitioner Profile) | Who collected the specimen |
![]() ![]() ![]() ![]() |
Σ | 0..1 | Collection time Slice: Unordered, Open by type:$this | |
![]() ![]() ![]() ![]() ![]() |
dateTime | |||
![]() ![]() ![]() ![]() ![]() |
Period | |||
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SΣ | 0..1 | dateTime | Collection time |
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S | 0..* | BackboneElement | Processing and processing step details |
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() |
SΣ | 0..* | CodeableConcept | State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen. |
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S | 0..* | Annotation | Comments |
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Path | Conformance | ValueSet | URI |
Specimen.status | required | SpecimenStatushttp://hl7.org/fhir/ValueSet/specimen-status|5.0.0 From the FHIR Standard | |
Specimen.type | required | SpecimenTypeValueSethttps://starsapi.csiro.au/fhir-ig/stars/ValueSet/specimen-type-value-set From this IG | |
Specimen.condition | extensible | Hl7VSSpecimenConditionhttp://terminology.hl7.org/ValueSet/v2-0493 |
Id | Grade | Path(s) | Details | Requirements |
dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().ofType(canonical) | %resource.descendants().ofType(uri) | %resource.descendants().ofType(url))) or descendants().where(reference = '#').exists() or descendants().where(ofType(canonical) = '#').exists() or descendants().where(ofType(canonical) = '#').exists()).not()).trace('unmatched', id).empty() | |
dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
dom-5 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() | |
dom-6 | best practice | Specimen | A resource should have narrative for robust management : text.`div`.exists() | |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |
This structure is derived from Specimen
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
---|---|---|---|---|
![]() ![]() |
Specimen | |||
![]() ![]() ![]() |
S | 0..* | Identifier | External Identifier |
![]() ![]() ![]() |
S | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type Value Set (required) |
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0..1 | Reference(CSIRO STARS Patient Profile | Group | Location) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device | |
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0..0 | |||
![]() ![]() ![]() |
0..* | Reference(CSIRO STARS Specimen Profile) | Specimen from which this specimen originated | |
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0..* | Reference(CSIRO STARS ServiceRequest Profile) | Why the specimen was collected | |
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||||
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0..* | Extension | Extension Slice: Unordered, Open by value:url | |
![]() ![]() ![]() ![]() ![]() |
S | 0..1 | Reference(CSIRO STARS Location Profile) | Specimen Collection Location URL: https://starsapi.csiro.au/fhir-ig/stars/StructureDefinition/specimen-collection-location |
![]() ![]() ![]() ![]() |
0..1 | Reference(CSIRO STARS Practitioner Profile) | Who collected the specimen | |
![]() ![]() ![]() ![]() |
0..1 | dateTime, Period | Collection time Slice: Unordered, Open by type:$this | |
![]() ![]() ![]() ![]() ![]() |
S | 0..1 | dateTime | Collection time |
![]() ![]() ![]() |
S | 0..* | BackboneElement | Processing and processing step details |
![]() ![]() ![]() |
S | 0..* | CodeableConcept | State of the specimen |
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S | 0..* | Annotation | Comments |
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Path | Conformance | ValueSet | URI |
Specimen.type | required | SpecimenTypeValueSethttps://starsapi.csiro.au/fhir-ig/stars/ValueSet/specimen-type-value-set From this IG |
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() | ||||
---|---|---|---|---|---|---|---|---|
![]() ![]() |
0..* | Specimen | Sample for analysis | |||||
![]() ![]() ![]() |
Σ | 0..1 | id | Logical id of this artifact | ||||
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Σ | 0..1 | Meta | Metadata about the resource | ||||
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?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
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0..1 | code | Language of the resource content Binding: AllLanguages (required): IETF language tag for a human language
| |||||
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0..1 | Narrative | Text summary of the resource, for human interpretation | |||||
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0..* | Resource | Contained, inline Resources | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored | ||||
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SΣ | 0..* | Identifier | External Identifier | ||||
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Σ | 0..1 | Identifier | Identifier assigned by the lab | ||||
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?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. | ||||
![]() ![]() ![]() |
SΣ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type Value Set (required) | ||||
![]() ![]() ![]() |
Σ | 0..1 | Reference(CSIRO STARS Patient Profile | Group | Location) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device | ||||
![]() ![]() ![]() |
0..* | Reference(CSIRO STARS Specimen Profile) | Specimen from which this specimen originated | |||||
![]() ![]() ![]() |
0..* | Reference(CSIRO STARS ServiceRequest Profile) | Why the specimen was collected | |||||
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Σ | 0..1 | code | grouped | pooled Binding: SpecimenCombined (required): Codes for the combined status of a specimen. | ||||
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0..* | CodeableConcept | The role the specimen serves Binding: SpecimenRole (preferred): Codes describing specimen role. | |||||
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0..* | BackboneElement | The physical feature of a specimen | |||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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1..1 | CodeableConcept | Highlighted feature Binding: SNOMEDCTBodyStructures (example): SNOMED CT Body site concepts | |||||
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1..1 | string | Information about the feature | |||||
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0..1 | BackboneElement | Collection details | |||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Extension Slice: Unordered, Open by value:url | |||||
![]() ![]() ![]() ![]() ![]() |
S | 0..1 | Reference(CSIRO STARS Location Profile) | Specimen Collection Location URL: https://starsapi.csiro.au/fhir-ig/stars/StructureDefinition/specimen-collection-location | ||||
![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() |
Σ | 0..1 | Reference(CSIRO STARS Practitioner Profile) | Who collected the specimen | ||||
![]() ![]() ![]() ![]() |
Σ | 0..1 | Collection time Slice: Unordered, Open by type:$this | |||||
![]() ![]() ![]() ![]() ![]() |
dateTime | |||||||
![]() ![]() ![]() ![]() ![]() |
Period | |||||||
![]() ![]() ![]() ![]() ![]() |
SΣ | 0..1 | dateTime | Collection time | ||||
![]() ![]() ![]() ![]() |
Σ | 0..1 | Duration | How long it took to collect specimen | ||||
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0..1 | SimpleQuantity | The quantity of specimen collected | |||||
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0..1 | CodeableConcept | Technique used to perform collection Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure. | |||||
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0..1 | CodeableReference(Device) | Device used to perform collection Binding Description: (example): The device that was used to obtain the specimen (e.g. a catheter or catheter part used to draw the blood via a central line). | |||||
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0..1 | Reference(Procedure) | The procedure that collects the specimen | |||||
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0..1 | CodeableReference(BodyStructure) | Anatomical collection site Binding: SNOMEDCTBodyStructures (example): SNOMED CT Body site concepts | |||||
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Σ | 0..1 | Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient. | |||||
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CodeableConcept | |||||||
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Duration | |||||||
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S | 0..* | BackboneElement | Processing and processing step details | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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0..1 | string | Textual description of procedure | |||||
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0..1 | CodeableConcept | Indicates the treatment step applied to the specimen Binding: SpecimenProcessingMethod (example): Type indicating the technique used to process the specimen. | |||||
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0..* | Reference(Substance) | Material used in the processing step | |||||
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0..1 | Date and time of specimen processing | ||||||
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dateTime | |||||||
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Period | |||||||
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0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) | |||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() |
1..1 | Reference(Device) | Device resource for the container | |||||
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0..1 | Reference(Location) | Where the container is | |||||
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0..1 | SimpleQuantity | Quantity of specimen within container | |||||
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SΣ | 0..* | CodeableConcept | State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen. | ||||
![]() ![]() ![]() |
S | 0..* | Annotation | Comments | ||||
![]() |
Path | Conformance | ValueSet | URI |
Specimen.language | required | AllLanguageshttp://hl7.org/fhir/ValueSet/all-languages|5.0.0 From the FHIR Standard | |
Specimen.status | required | SpecimenStatushttp://hl7.org/fhir/ValueSet/specimen-status|5.0.0 From the FHIR Standard | |
Specimen.type | required | SpecimenTypeValueSethttps://starsapi.csiro.au/fhir-ig/stars/ValueSet/specimen-type-value-set From this IG | |
Specimen.combined | required | SpecimenCombinedhttp://hl7.org/fhir/ValueSet/specimen-combined|5.0.0 From the FHIR Standard | |
Specimen.role | preferred | SpecimenRolehttp://hl7.org/fhir/ValueSet/specimen-role From the FHIR Standard | |
Specimen.feature.type | example | SNOMEDCTBodyStructureshttp://hl7.org/fhir/ValueSet/body-site From the FHIR Standard | |
Specimen.collection.method | example | FHIRSpecimenCollectionMethodhttp://hl7.org/fhir/ValueSet/specimen-collection-method From the FHIR Standard | |
Specimen.collection.device | example | ||
Specimen.collection.bodySite | example | SNOMEDCTBodyStructureshttp://hl7.org/fhir/ValueSet/body-site From the FHIR Standard | |
Specimen.collection.fastingStatus[x] | extensible | Hl7VSRelevantClincialInformationhttp://terminology.hl7.org/ValueSet/v2-0916 | |
Specimen.processing.method | example | SpecimenProcessingMethodhttp://hl7.org/fhir/ValueSet/specimen-processing-method From the FHIR Standard | |
Specimen.condition | extensible | Hl7VSSpecimenConditionhttp://terminology.hl7.org/ValueSet/v2-0493 |
Id | Grade | Path(s) | Details | Requirements |
dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().ofType(canonical) | %resource.descendants().ofType(uri) | %resource.descendants().ofType(url))) or descendants().where(reference = '#').exists() or descendants().where(ofType(canonical) = '#').exists() or descendants().where(ofType(canonical) = '#').exists()).not()).trace('unmatched', id).empty() | |
dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
dom-5 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() | |
dom-6 | best practice | Specimen | A resource should have narrative for robust management : text.`div`.exists() | |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |
This structure is derived from Specimen
Summary
Must-Support: 7 elements
Prohibited: 1 element
Structures
This structure refers to these other structures:
Extensions
This structure refers to these extensions:
Slices
This structure defines the following Slices:
Key Elements View
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
---|---|---|---|---|
![]() ![]() |
0..* | Specimen | Sample for analysis | |
![]() ![]() ![]() |
?!Σ | 0..1 | uri | A set of rules under which this content was created |
![]() ![]() ![]() |
0..* | Resource | Contained, inline Resources | |
![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored |
![]() ![]() ![]() |
SΣ | 0..* | Identifier | External Identifier |
![]() ![]() ![]() |
?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. |
![]() ![]() ![]() |
SΣ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type Value Set (required) |
![]() ![]() ![]() |
Σ | 0..1 | Reference(CSIRO STARS Patient Profile | Group | Location) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device |
![]() ![]() ![]() |
0..* | Reference(CSIRO STARS Specimen Profile) | Specimen from which this specimen originated | |
![]() ![]() ![]() |
0..* | Reference(CSIRO STARS ServiceRequest Profile) | Why the specimen was collected | |
![]() ![]() ![]() |
0..1 | BackboneElement | Collection details | |
![]() ![]() ![]() ![]() |
0..* | Extension | Extension Slice: Unordered, Open by value:url | |
![]() ![]() ![]() ![]() ![]() |
S | 0..1 | Reference(CSIRO STARS Location Profile) | Specimen Collection Location URL: https://starsapi.csiro.au/fhir-ig/stars/StructureDefinition/specimen-collection-location |
![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() |
Σ | 0..1 | Reference(CSIRO STARS Practitioner Profile) | Who collected the specimen |
![]() ![]() ![]() ![]() |
Σ | 0..1 | Collection time Slice: Unordered, Open by type:$this | |
![]() ![]() ![]() ![]() ![]() |
dateTime | |||
![]() ![]() ![]() ![]() ![]() |
Period | |||
![]() ![]() ![]() ![]() ![]() |
SΣ | 0..1 | dateTime | Collection time |
![]() ![]() ![]() |
S | 0..* | BackboneElement | Processing and processing step details |
![]() ![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() |
SΣ | 0..* | CodeableConcept | State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen. |
![]() ![]() ![]() |
S | 0..* | Annotation | Comments |
![]() |
Path | Conformance | ValueSet | URI |
Specimen.status | required | SpecimenStatushttp://hl7.org/fhir/ValueSet/specimen-status|5.0.0 From the FHIR Standard | |
Specimen.type | required | SpecimenTypeValueSethttps://starsapi.csiro.au/fhir-ig/stars/ValueSet/specimen-type-value-set From this IG | |
Specimen.condition | extensible | Hl7VSSpecimenConditionhttp://terminology.hl7.org/ValueSet/v2-0493 |
Id | Grade | Path(s) | Details | Requirements |
dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().ofType(canonical) | %resource.descendants().ofType(uri) | %resource.descendants().ofType(url))) or descendants().where(reference = '#').exists() or descendants().where(ofType(canonical) = '#').exists() or descendants().where(ofType(canonical) = '#').exists()).not()).trace('unmatched', id).empty() | |
dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
dom-5 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() | |
dom-6 | best practice | Specimen | A resource should have narrative for robust management : text.`div`.exists() | |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |
Differential View
This structure is derived from Specimen
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() |
---|---|---|---|---|
![]() ![]() |
Specimen | |||
![]() ![]() ![]() |
S | 0..* | Identifier | External Identifier |
![]() ![]() ![]() |
S | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type Value Set (required) |
![]() ![]() ![]() |
0..1 | Reference(CSIRO STARS Patient Profile | Group | Location) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device | |
![]() ![]() ![]() |
0..0 | |||
![]() ![]() ![]() |
0..* | Reference(CSIRO STARS Specimen Profile) | Specimen from which this specimen originated | |
![]() ![]() ![]() |
0..* | Reference(CSIRO STARS ServiceRequest Profile) | Why the specimen was collected | |
![]() ![]() ![]() |
||||
![]() ![]() ![]() ![]() |
0..* | Extension | Extension Slice: Unordered, Open by value:url | |
![]() ![]() ![]() ![]() ![]() |
S | 0..1 | Reference(CSIRO STARS Location Profile) | Specimen Collection Location URL: https://starsapi.csiro.au/fhir-ig/stars/StructureDefinition/specimen-collection-location |
![]() ![]() ![]() ![]() |
0..1 | Reference(CSIRO STARS Practitioner Profile) | Who collected the specimen | |
![]() ![]() ![]() ![]() |
0..1 | dateTime, Period | Collection time Slice: Unordered, Open by type:$this | |
![]() ![]() ![]() ![]() ![]() |
S | 0..1 | dateTime | Collection time |
![]() ![]() ![]() |
S | 0..* | BackboneElement | Processing and processing step details |
![]() ![]() ![]() |
S | 0..* | CodeableConcept | State of the specimen |
![]() ![]() ![]() |
S | 0..* | Annotation | Comments |
![]() |
Path | Conformance | ValueSet | URI |
Specimen.type | required | SpecimenTypeValueSethttps://starsapi.csiro.au/fhir-ig/stars/ValueSet/specimen-type-value-set From this IG |
Snapshot View
Name | Flags | Card. | Type | Description & Constraints Filter: ![]() ![]() | ||||
---|---|---|---|---|---|---|---|---|
![]() ![]() |
0..* | Specimen | Sample for analysis | |||||
![]() ![]() ![]() |
Σ | 0..1 | id | Logical id of this artifact | ||||
![]() ![]() ![]() |
Σ | 0..1 | Meta | Metadata about the resource | ||||
![]() ![]() ![]() |
?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
![]() ![]() ![]() |
0..1 | code | Language of the resource content Binding: AllLanguages (required): IETF language tag for a human language
| |||||
![]() ![]() ![]() |
0..1 | Narrative | Text summary of the resource, for human interpretation | |||||
![]() ![]() ![]() |
0..* | Resource | Contained, inline Resources | |||||
![]() ![]() ![]() |
0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() |
?!Σ | 0..* | Extension | Extensions that cannot be ignored | ||||
![]() ![]() ![]() |
SΣ | 0..* | Identifier | External Identifier | ||||
![]() ![]() ![]() |
Σ | 0..1 | Identifier | Identifier assigned by the lab | ||||
![]() ![]() ![]() |
?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. | ||||
![]() ![]() ![]() |
SΣ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type Value Set (required) | ||||
![]() ![]() ![]() |
Σ | 0..1 | Reference(CSIRO STARS Patient Profile | Group | Location) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device | ||||
![]() ![]() ![]() |
0..* | Reference(CSIRO STARS Specimen Profile) | Specimen from which this specimen originated | |||||
![]() ![]() ![]() |
0..* | Reference(CSIRO STARS ServiceRequest Profile) | Why the specimen was collected | |||||
![]() ![]() ![]() |
Σ | 0..1 | code | grouped | pooled Binding: SpecimenCombined (required): Codes for the combined status of a specimen. | ||||
![]() ![]() ![]() |
0..* | CodeableConcept | The role the specimen serves Binding: SpecimenRole (preferred): Codes describing specimen role. | |||||
![]() ![]() ![]() |
0..* | BackboneElement | The physical feature of a specimen | |||||
![]() ![]() ![]() ![]() |
0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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1..1 | CodeableConcept | Highlighted feature Binding: SNOMEDCTBodyStructures (example): SNOMED CT Body site concepts | |||||
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1..1 | string | Information about the feature | |||||
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0..1 | BackboneElement | Collection details | |||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Extension Slice: Unordered, Open by value:url | |||||
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S | 0..1 | Reference(CSIRO STARS Location Profile) | Specimen Collection Location URL: https://starsapi.csiro.au/fhir-ig/stars/StructureDefinition/specimen-collection-location | ||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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Σ | 0..1 | Reference(CSIRO STARS Practitioner Profile) | Who collected the specimen | ||||
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Σ | 0..1 | Collection time Slice: Unordered, Open by type:$this | |||||
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dateTime | |||||||
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Period | |||||||
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SΣ | 0..1 | dateTime | Collection time | ||||
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Σ | 0..1 | Duration | How long it took to collect specimen | ||||
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0..1 | SimpleQuantity | The quantity of specimen collected | |||||
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0..1 | CodeableConcept | Technique used to perform collection Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure. | |||||
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0..1 | CodeableReference(Device) | Device used to perform collection Binding Description: (example): The device that was used to obtain the specimen (e.g. a catheter or catheter part used to draw the blood via a central line). | |||||
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0..1 | Reference(Procedure) | The procedure that collects the specimen | |||||
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0..1 | CodeableReference(BodyStructure) | Anatomical collection site Binding: SNOMEDCTBodyStructures (example): SNOMED CT Body site concepts | |||||
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Σ | 0..1 | Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient. | |||||
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CodeableConcept | |||||||
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Duration | |||||||
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S | 0..* | BackboneElement | Processing and processing step details | ||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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0..1 | string | Textual description of procedure | |||||
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0..1 | CodeableConcept | Indicates the treatment step applied to the specimen Binding: SpecimenProcessingMethod (example): Type indicating the technique used to process the specimen. | |||||
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0..* | Reference(Substance) | Material used in the processing step | |||||
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0..1 | Date and time of specimen processing | ||||||
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dateTime | |||||||
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Period | |||||||
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0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) | |||||
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0..1 | string | Unique id for inter-element referencing | |||||
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0..* | Extension | Additional content defined by implementations | |||||
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?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
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1..1 | Reference(Device) | Device resource for the container | |||||
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0..1 | Reference(Location) | Where the container is | |||||
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0..1 | SimpleQuantity | Quantity of specimen within container | |||||
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SΣ | 0..* | CodeableConcept | State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen. | ||||
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S | 0..* | Annotation | Comments | ||||
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Path | Conformance | ValueSet | URI |
Specimen.language | required | AllLanguageshttp://hl7.org/fhir/ValueSet/all-languages|5.0.0 From the FHIR Standard | |
Specimen.status | required | SpecimenStatushttp://hl7.org/fhir/ValueSet/specimen-status|5.0.0 From the FHIR Standard | |
Specimen.type | required | SpecimenTypeValueSethttps://starsapi.csiro.au/fhir-ig/stars/ValueSet/specimen-type-value-set From this IG | |
Specimen.combined | required | SpecimenCombinedhttp://hl7.org/fhir/ValueSet/specimen-combined|5.0.0 From the FHIR Standard | |
Specimen.role | preferred | SpecimenRolehttp://hl7.org/fhir/ValueSet/specimen-role From the FHIR Standard | |
Specimen.feature.type | example | SNOMEDCTBodyStructureshttp://hl7.org/fhir/ValueSet/body-site From the FHIR Standard | |
Specimen.collection.method | example | FHIRSpecimenCollectionMethodhttp://hl7.org/fhir/ValueSet/specimen-collection-method From the FHIR Standard | |
Specimen.collection.device | example | ||
Specimen.collection.bodySite | example | SNOMEDCTBodyStructureshttp://hl7.org/fhir/ValueSet/body-site From the FHIR Standard | |
Specimen.collection.fastingStatus[x] | extensible | Hl7VSRelevantClincialInformationhttp://terminology.hl7.org/ValueSet/v2-0916 | |
Specimen.processing.method | example | SpecimenProcessingMethodhttp://hl7.org/fhir/ValueSet/specimen-processing-method From the FHIR Standard | |
Specimen.condition | extensible | Hl7VSSpecimenConditionhttp://terminology.hl7.org/ValueSet/v2-0493 |
Id | Grade | Path(s) | Details | Requirements |
dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() | |
dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().ofType(canonical) | %resource.descendants().ofType(uri) | %resource.descendants().ofType(url))) or descendants().where(reference = '#').exists() or descendants().where(ofType(canonical) = '#').exists() or descendants().where(ofType(canonical) = '#').exists()).not()).trace('unmatched', id).empty() | |
dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() | |
dom-5 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() | |
dom-6 | best practice | Specimen | A resource should have narrative for robust management : text.`div`.exists() | |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |
This structure is derived from Specimen
Summary
Must-Support: 7 elements
Prohibited: 1 element
Structures
This structure refers to these other structures:
Extensions
This structure refers to these extensions:
Slices
This structure defines the following Slices:
Other representations of profile: CSV, Excel, Schematron