STARS Implementation Guide
0.3.0 - ci-build
This page is part of the Csiro Stars (v0.3.0: Releases Draft) based on FHIR (HL7® FHIR® Standard) v5.0.0. No current official version has been published yet. For a full list of available versions, see the Directory of published versions
Within FHIR receiving results from a testing laboratory is known as a DiagnosticReport. Changes have been made to the standard R5 DiagnosticReport Profile to better accomodate our individual situation and testing arrangements. You can view the details regarding the customised profile here CsiroStarsDiagnosticReportProfile.
Below is the field list as specified for the CSV file format. All required fields must be present within each row of the file.
| Name (Required) | Definition | Value |
|---|---|---|
| messageheader_event | Message type: Must be "ServiceRequest" for sending specimen | ValueSet: MessageTypeValueSet |
| messageheader_receiver | receiver node | node username |
| messageheader_sender | sender node | node username or senders username |
| messageheader_author_identifier | stars username | |
| messageheader_author_fullname | Free-text | |
| messageheader_author_email | Free-text | |
| diagnosticreport_identifier | Free-text | |
| diagnosticreport_status | ValueSet: [] | |
| diagnosticreport_issued | DateTime | |
| diagnosticreport_resultsinterpreter_fullname | Free-text | |
| observation_analysis_identifier | ValueSet: AnalysisValueSet | |
| observation_sender_identifier | Senders sample reference. ie the lab that performed the testing. | Free-text |
| observation_status | ValueSet: [] | |
| observation_code | ValueSet: [] |
| Name (Optional) | Definition | Value |
|---|---|---|
| messageheader_id | Message Identifier: UUID | Free-text (UUID) |
| diagnosticreport_requisition | Which submissions or job requisitions the report relates to. | Free-text |
| diagnosticreport_media_title | Filename of the attached report. | Free-text |
| diagnosticreport_media_docstatus | Status of the attached report. | ValueSet: CompositionStatus |
| diagnosticreport_conclusion | Free-text | |
| observation_receiver_identifier | Receivers sample reference. ie the lab that submitted the samples for testing. | Free-text |
| observation_issued | Timestamp when the test was authorised | DateTime |
| observation_effective | Timestamp when the test was completed | DateTime |
| observation_dataabsentreason | "Reason for the test not being complted. "Insufficient sample size received to complete the test" | Free-text |
| observation_interpretation | ValueSet: [] | |
| observation_note | Free-text | |
| observation_value | Result value. Either string or decimal | Free-text |
| observation_valuequantity_unit | Display name of the unit's code. eg "Cycle Threshold". If value is decimal then unit may be specified | ValueSet: UcumValueSet |
| observation_valuequantity_comparator | If value is decimal then comparator may be specified | ValueSet: ComparatorValueSet |
| New Field | Old Field |
|---|---|
| messageheader_id | MESSAGE.STARS_ID |
| messageheader_event | MESSAGE.MESSAGE_TYPE |
| messageheader_receiver | MESSAGE.DEST_NODE |
| messageheader_sender | MESSAGE.SOURCE_NODE |
| messageheader_author_identifier | MESSAGE.USER_ID |
| messageheader_author_fullname | (new) |
| messageheader_author_email | MESSAGE.EMAIL |
| diagnosticreport_identifier | |
| diagnosticreport_requisition | JOB.CUST_JOB_REF |
| diagnosticreport_status | |
| diagnosticreport_issued | MESSAGE.DATE_SENT |
| diagnosticreport_resultsinterpreter_fullname | JOB.REPORTED_BY |
| diagnosticreport_media_title | OBJECT.FILE_NAME |
| diagnosticreport_media_docstatus | (new) |
| diagnosticreport_conclusion | JOB.SUMMARY |
| observation_analysis_identifier | RESULT.TEST_ORDER_NUMBER |
| observation_sender_identifier | SAMPLE.TESTING_JOB_SAMP_REF |
| observation_receiver_identifier | SAMPLE.CUST_JOB_SAMP_REF |
| observation_status | (new) |
| observation_issued | (new) |
| observation_code | RESULT.TEST_REF |
| observation_effective | TEST.DATE_TESTED |
| observation_dataabsentreason | (new) |
| observation_interpretation | (new) |
| observation_note | TEST.TEST_SUMMARY |
| observation_value | RESULT.VALUE |
| observation_valuequantity_unit | (new) |
| observation_valuequantity_comparator | (new) |
This data structure is used internally as an intermediary format when converting between CSV and FHIR messages and may help to understand the structure of the complete FHIR Profiles. See the Artifact Profile List for more detailed information.