STARS Implementation Guide
0.1.0 - ci-build

STARS Implementation Guide - Local Development build (v0.1.0). See the Directory of published versions

CodeSystem: STARS Legacy Sample Type Code System

Official URL: https://acdp.csiro.au/starsapi-sandbox/fhir-ig/stars/CodeSystem/legacy-sample-type-code-system Version: 0.1.0
Draft as of 2023-04-26 Computable Name: LegacySampleTypeCodeSystem

Codes describing various Sample Type.

This Code system is referenced in the content logical definition of the following value sets:

This code system https://acdp.csiro.au/starsapi-sandbox/fhir-ig/stars/CodeSystem/legacy-sample-type-code-system defines the following codes:

CodeDisplay
ABDOMEN Abdomen
ABDOMINAL_CONTENTS Abdominal Contents
ABDOMINAL_FLUID Abdominal Fluid
ABDOMINAL_WALL Abdominal Wall
ABSCESS Abscess
ADIPOSE_FAT Adipose_Fat
ADRENAL_GLAND Adrenal Gland
AGAR Agar
AIR Air
AIR_DRIED_TISSUE Air Dried Tissue
AIR_SAC Air Sac
ALGAE Algae
ALIMENTARY_TRACT Alimentary Tract
ALLANTOIC_FLUID Allantoic Fluid
ALLANTOIS Allantois
AMNION Amnion
AMNIOTIC_FLUID Amniotic Fluid
AMPOULE Ampoule
ANAL_GLAND Anal Gland
ANAL_SAC Anal Sac
ANIMAL Animal
ANTENNAL_GLAND Antennal Gland
ANTERIOR_VENA_CAVA anterior vena cava
ANTIGEN Antigen
ANTI_SERA Anti Sera
ANTI_VIRAL Anti Viral
ANUS Anus
AORTA Aorta
AQUEOUS_HUMOUR Aqueous humour
ARTERY Artery
ARTERY_PULMONARY Artery - Pulmonary
AUTONOMIC_NERVE Autonomic Nerve
BACTEC_MEDIA Bactec media
BACTERIA Bacteria
BARK Bark
BASAL_GANGLIA Basal Ganglia
BILE Bile
BILE_DUCT Bile Duct
BLADDER Bladder
BLOOD Blood
BLOOD_BUFFY_COAT Blood - Buffy Coat
BLOOD_FOETAL_CALF_SERUM Blood - Foetal Calf Serum
BLOOD_SERUM Blood - Serum
BLOOD_VESSEL Blood Vessel
BONE Bone
BONE_EPIPHYSIS Bone - Epiphysis
BONE_FEMUR Bone - Femur
BONE_FIBULA Bone - Fibula
BONE_HIP Bone - Hip
BONE_HUMERUS Bone - Humerus
BONE_JAW Bone - Jaw
BONE_MANDIBLE Bone - Mandible
BONE_MARROW Bone marrow
BONE_MAXILLA Bone - Maxilla
BONE_METACARPUS Bone - Metacarpus
BONE_METATARSUS Bone - Metatarsus
BONE_PELVIC Bone - Pelvic
BONE_PETROUS Bone - Petrous
BONE_RIB Bone - Rib
BONE_SKULL Bone - Skull
BONE_STERNUM Bone - Sternum
BONE_TEMPORAL Bone - Temporal
BONE_TIBIA Bone - Tibia
BRAIN Brain
BRAIN_DURA_MATER Brain - Dura Mater
BRAIN_EPENDYMA Brain - Ependyma
BRAIN_MENINGE Brain - Meninge
BRAIN_PENIAL_GLAND Brain - Penial Gland
BRAIN_STEM Brain Stem
BRAIN_STEM_MEDULLA_OBLONGATA Brain Stem - Medulla oblongata
BRANCH Branch
BRONCHIAL Bronchial
BRONCHIAL_WASH Bronchial Wash
BUCCAL_MUCOSA Buccal mucosa
BULBOURETHRAL_GLAND Bulbourethral gland
BURSA Bursa
BYSSUS Byssus
CAECAL_CONTENTS Caecal Contents
CAECAL_FLUID Caecal Fluid
CAECUM Caecum
CALCULUS Calculus
CALCULUS_URINE(UROLITH) Calculus - Urine (Urolith)
CARAPACE Carapace
CARCASE Carcase
CARCASE/S Carcase/s
CARPUS Carpus
CARTILEDGE Cartiledge
CDNA_PRODUCT cDNA Product
CELLS Cells
CEPHALOTHORAX Cephalothorax
CEREBELLUM Cerebellum
CEREBROSPINAL_FLUID Cerebrospinal Fluid
CEREBRUM Cerebrum
CERVICAL_CORD Cervical Cord
CERVIX Cervix
CHEMICALS Chemicals
CHEST Chest
CHEST_CAVITY_FLUID Chest Cavity Fluid
CHORIO_ALLANTOIC_MEMBRANE Chorio Allantoic Membrane
CIRCUMANAL_GLAND Circumanal gland
CLAW Claw
CLITORAL_FOSSA Clitoral fossa
CLITORIS Clitoris
CLOACA Cloaca
COLON Colon
COLON_CONTENTS Colon Contents
COLON_FLUID Colon Fluid
COLOSTRUM Colostrum
COMB Comb
COMB_BROOD Comb - Brood
CONJUNCTIVA Conjunctiva
CONTAINER Container
CONTROL Control
CORNEA Cornea
CORONET Coronet
COTYLEDON Cotyledon
CRANIAL_NERVE Cranial Nerve
CRANIUM Cranium
CYST Cyst
DIAGPHRAGM Diagphragm
DIGITAL_IMAGE Digital Image
DIP_FLUID Dip fluid
DNA DNA
EAR Ear
EAR_CERUMINOUS_GLAND Ear - Ceruminous Gland
EAR_DISCHARGE Ear Discharge
EAR_PINNA Ear - Pinna
EFLUENT Efluent
EGG Egg
EGG_SHELL Egg - Shell
EGG_YOLK Egg - Yolk
ELECTRON_MICROSCOPY_RESIN_BLOCK Electron Microscopy Resin Block
EMBRYO Embryo
ENDOMETRIUM Endometrium
EPIDIDYMIS Epididymis
EPIGLOTTIS Epiglottis
EPITHELIUM Epithelium
EXUDATE Exudate
EYE Eye
EYELID Eyelid
EYELID_THIRD Eyelid - Third
EYE_LENS Eye - Lens
EYE_OPTIC_NERVE Eye - Optic Nerve
EYE_RETINA Eye - Retina
EYE_SCLERA Eye - Sclera
EYE_VITREOUS_HUMOUR Eye - Vitreous Humour
FAECAL_PAPER Faecal Paper
FAECES Faeces
FALLOPIAN_TUBE_OVIDUCT Fallopian Tube_Oviduct
FASCIA Fascia
FEATHER Feather
FEED Feed
FERTILISER Fertiliser
FETLOCK Fetlock
FIBRES Fibres
FIBULA Fibula
FILTER Filter
FIN Fin
FLEA Flea
FLIPPER Flipper
FLOWER Flower
FLUID Fluid
FLUSH Flush
FLY Fly
FOETAL_MEMBRANES Foetal Membranes
FOETUS Foetus
FOOT Foot
FOREIGN_BODY Foreign Body
FRAGMENTED_ANTIBODY_FC_REGION Fragmented Antibody Fc Region
FRUIT Fruit
FTA_CARD FTA Card
FUNGUS Fungus
GALL_BLADDER Gall Bladder
GANGLION Ganglion
GANGLION_TRIGEMINAL Ganglion Trigeminal
GASTRIC_CONTENTS Gastric Contents
GASTRIC_FLUID Gastric Fluid
GASTRO_INTESTINAL_TRACT Gastro Intestinal Tract
GEL Gel
GILL Gill
GIZZARD Gizzard
GLANS_PENIS Glans penis
GLUTARALDEHYDE_FIXED_TISSUE Glutaraldehyde fixed tissue
GONAD Gonad
GULAR_VALVE Gular Valve
GUM(GINGIVA) Gum (Gingiva)
GUT Gut
GUTTURAL_POUCH Guttural Pouch
HAEMATOMA Haematoma
HAEMOLYMPH Haemolymph
HAIR Hair
HAIR_FOLLICLE Hair Follicle
HARD_PALATE Hard Palate
HATCHERY_WASTE Hatchery Waste
HAY Hay
HEAD Head
HEART Heart
HEART_ATRIOVENTRICULAR_VALVE Heart - Atrioventricular valve
HEART_ATRIUM Heart - Atrium
HEART_VALVE Heart - Valve
HEART_VENTRICLE Heart - Ventricle
HELMINTHS_WORMS Helminths - Worms
HIP Hip
HISTOLOGY_BLOCK Histology Block
HOCK Hock
HOMEGENATE Homegenate
HONEY Honey
HOOF Hoof
HORN Horn
ILEAL_SCRAPES Ileal Scrapes
ILEOCAECAL Ileocaecal
ILEOCAECAL_VALVE Ileocaecal Valve
ILEUM Ileum
ILEUM_TERMINAL Ileum - terminal
INGESTA Ingesta
INSECTS Insects
JOINT Joint
JOINT_CARPAL Joint - Carpal
JOINT_INTERPHALANGEAL Joint - interphalangeal
JOINT_INTERVERTEBRAL Joint - intervertebral
JOINT_MENISCUS Joint - Meniscus
JOINT_SYNOVIUM Joint - Synovium
KIDNEY Kidney
KNEE_ASPIRATE Knee Aspirate
LARGE_INTESTINE Large Intestine
LARGE_INTESTINE_FLUID Large Intestine Fluid
LARVAE Larvae
LARYNX Larynx
LEAF Leaf
LEG Leg
LEG_FORE Leg - Fore
LEG_HIND Leg - Hind
LESION Lesion
LIGAMENT Ligament
LIP Lip
LITHIUM_HEPARIN_BLOOD Lithium Heparin Blood
LIVER Liver
LOUSE Louse
LUNG Lung
LUNG_PULMONARY_FLUID Lung - Pulmonary Fluid
LUNG_WORM Lung Worm
LYMPH_NODE Lymph Node
LYMPH_NODE_ANORECTAL Lymph Node - Anorectal
LYMPH_NODE_AXILLARY Lymph Node - Axillary
LYMPH_NODE_BRONCHIAL Lymph Node - Bronchial
LYMPH_NODE_CAECAL Lymph Node - Caecal
LYMPH_NODE_CAUDAL_MEDIASTINAL Lymph Node - caudal mediastinal
LYMPH_NODE_CELIAC Lymph Node - Celiac
LYMPH_NODE_CERVICAL Lymph Node - Cervical
LYMPH_NODE_COLIC Lymph Node - Colic
LYMPH_NODE_COSTOCERVICAL Lymph Node - Costocervical
LYMPH_NODE_COXAL Lymph Node - Coxal
LYMPH_NODE_CRANIAL_MEDIASTINAL Lymph Node - Cranial mediastinal
LYMPH_NODE_CUBITAL Lymph Node - Cubital
LYMPH_NODE_GASTRIC Lymph Node - Gastric
LYMPH_NODE_GASTROHEPATIC Lymph Node - Gastrohepatic
LYMPH_NODE_HEAD Lymph Node - Head
LYMPH_NODE_HEPATIC Lymph Node - Hepatic
LYMPH_NODE_ILIAC Lymph Node - Iliac
LYMPH_NODE_ILIOFEMORAL Lymph Node - Iliofemoral
LYMPH_NODE_INGUINAL Lymph Node - Inguinal
LYMPH_NODE_INTERCOSTAL Lymph Node - Intercostal
LYMPH_NODE_ISCHIATIC Lymph Node - Ischiatic
LYMPH_NODE_LUMBAR Lymph Node - Lumbar
LYMPH_NODE_MANDIBULAR Lymph Node - Mandibular
LYMPH_NODE_MEDIASTINAL Lymph Node - Mediastinal
LYMPH_NODE_MESENTERIC Lymph Node - Mesenteric
LYMPH_NODE_PAROTID Lymph Node - Parotid
LYMPH_NODE_PERICARDIAL Lymph Node - Pericardial
LYMPH_NODE_POPLITEAL Lymph Node - Popliteal
LYMPH_NODE_PRECURAL Lymph Node - Precural
LYMPH_NODE_PRESCAPULAR Lymph Node - Prescapular
LYMPH_NODE_PULMONARY Lymph Node - Pulmonary
LYMPH_NODE_RECTAL Lymph Node - Rectal
LYMPH_NODE_RENAL Lymph Node - Renal
LYMPH_NODE_RETROPHARYNGEAL Lymph Node - Retropharyngeal
LYMPH_NODE_SCACRAL Lymph Node - Scacral
LYMPH_NODE_STERNAL Lymph Node - Sternal
LYMPH_NODE_SUBILIAC Lymph Node - Subiliac
LYMPH_NODE_SUB_MANDIBULAR Lymph Node - Sub Mandibular
LYMPH_NODE_SUPERFICIAL_CERVICAL Lymph Node - Superficial Cervical
LYMPH_NODE_SUPER_INGUINAL Lymph Node - Super Inguinal
LYMPH_NODE_SUPRAMAMMARY Lymph Node - Supramammary
LYMPH_NODE_TRACHEOBRONCHIAL Lymph Node - Tracheobronchial
MAGGOT Maggot
MAMMARY_GLAND Mammary Gland
MANTLE Mantle
MASS Mass
MATERIAL Material
MEAL Meal
MEAT Meat
MEDIA Media
MEGALOPA Megalopa
MESENTERY Mesentery
MICROGRAPH Micrograph
MILK Milk
MILT(FISH_SEMEN) Milt (Fish Semen)
MITE Mite
MONOCLONAL_ANTIBODIES Monoclonal Antibodies
MOUTH Mouth
MOUTH_ORAL_CAVITY Mouth - Oral Cavity
MOUTH_ORAL_MUCOSA Mouth - Oral Mucosa
MOUTH_SOFT_PALATE Mouth - Soft Palate
MUCUS Mucus
MUSCLE Muscle
MUSCLE_ADDUCTOR Muscle - Adductor
MUSCLE_SKELETAL Muscle - Skeletal
NASAL/NOSE Nasal/Nose
NASAL_CAVITY Nasal Cavity
NASAL_DISCHARGE Nasal Discharge
NASAL_FLUID Nasal Fluid
NASAL_MUCOSA Nasal Mucosa
NASAL_PLANUM Nasal Planum
NASAL_SEPTUM Nasal Septum
NASAL_SINUS Nasal Sinus
NASAL_TURBINATES Nasal Turbinates
NASOPHARYNX Nasopharynx
NECK Neck
NECROTIC_TISSUE Necrotic Tissue
NERVE Nerve
NERVE_PERIPHERAL Nerve - Peripheral
NERVE_SCIATIC Nerve - Sciatic
NOSTRIL Nostril
NOSTRIL(NARE) Nostril (Nare)
NUT Nut
OCCIPITAL_LOBE Occipital Lobe
OESOPHAGUS Oesophagus
OIL Oil
OLFACTORY_LOBE Olfactory Lobe
OMENTUM Omentum
OPTIMEN_MEDIA Optimen Media
OTHER Other
OVARIAN_FLUID Ovarian Fluid
OVARY Ovary
PALPS Palps
PANCREAS Pancreas
PARAFFIN_EMBEDDED_BLOCK Paraffin Embedded Block
PARASITE Parasite
PARATHYROID_GLAND Parathyroid Gland
PAROTID_GLAND Parotid Gland
PASTERN Pastern
PASTURE Pasture
PCR_PRODUCTS PCR Products
PCR_SAMPLE PCR Sample
PENIS Penis
PENIS_PREPUTIAL Penis - Preputial
PERICARDIUM Pericardium
PERITONEUM Peritoneum
PHALANX Phalanx
PHARYNX Pharynx
PINEAL_GLAND Pineal Gland
PIPPED_EMBRYO Pipped Embryo
PITUITARY_GLAND Pituitary gland
PLACENTA Placenta
PLANT Plant
PLANT_EXTRACT Plant Extract
PLASMA Plasma
PLASMID_(DNA) Plasmid (DNA)
PLEURA Pleura
PLEURAL_CAVITY Pleural Cavity
PLEURAL_FLUID Pleural Fluid
POOLED_TISSUES Pooled Tissues
PREPUCE Prepuce
PROSTATE Prostate
PROTEIN Protein
PROVENTRICULUS Proventriculus
PURIFIED_DNA_EXTRACT Purified DNA extract
PUS Pus
QUALITY_ASSURANCE_SAMPLES Quality assurance samples
REAGENT Reagent
RECTUM Rectum
RENAL_LYMPH_NODE Renal Lymph Node
REPRODUCTORY_TRACT Reproductory Tract
RESIN_SECTIONS_ON_EM_GRID Resin Sections on EM Grid
RLT_BUFFER RLT Buffer
RNA_EXTRACT RNA Extract
ROSTRUM(BEAK_OR_SNOUT) Rostrum (beak or snout)
SALIVA Saliva
SALIVARY_GLAND Salivary Gland
SCAB Scab
SCALE Scale
SCROTUM Scrotum
SEDIMENT Sediment
SEED Seed
SEMEN Semen
SEMINAL_VESICLES Seminal Vesicles
SHELL Shell
SHELL_MEMBRANE Shell Membrane
SILAGE Silage
SINUS Sinus
SINUS_FRONTAL Sinus - Frontal
SKELETAL_MUSCLE Skeletal Muscle
SKIN Skin
SKIN_FOLLICLES Skin Follicles
SKIN_LESION Skin Lesion
SLIDE Slide
SLUDGE Sludge
SMALL_INTESTINE Small Intestine
SMALL_INTESTINE_DUODENUM Small Intestine - Duodenum
SMALL_INTESTINE_JEJUNUM Small Intestine - Jejunum
SNOUT Snout
SOIL Soil
SORGHUM Sorghum
SPERM Sperm
SPERMATIC_CORD Spermatic Cord
SPINAL_CORD Spinal Cord
SPINAL_CORD_CERVICAL Spinal Cord - Cervical
SPINAL_CORD_LUMBAR Spinal Cord - Lumbar
SPINAL_CORD_SACRAL Spinal Cord - Sacral
SPINAL_CORD_SYRINX Spinal Cord - Syrinx
SPINAL_CORD_THORACIC Spinal Cord - Thoracic
SPINE Spine
SPLEEN Spleen
SPUTUM Sputum
STEM Stem
STOMACH Stomach
STOMACH_ABOMASUM Stomach - Abomasum
STOMACH_CONTENTS Stomach Contents
STOMACH_OMASUM Stomach - Omasum
STOMACH_PROVENTRICLE Stomach - Proventricle
STOMACH_RETICULUM Stomach - Reticulum
STOMACH_RUMEN Stomach - Rumen
STONE Stone
STONE_CALCULI Stone - Calculi
STONE_UROLITH Stone - Urolith
SUB_CUTANEOUS_FLUID Sub Cutaneous Fluid
SUPERNATANT Supernatant
SWAB Swab
SYNOVIAL_FLUID Synovial Fluid
SYNOVIAL_MEMBRANE Synovial Membrane
SYNOVIUM Synovium
TADPOLE Tadpole
TAIL Tail
TARSUS Tarsus
TEAT Teat
TENDON Tendon
TESTIS Testis
THALAMUS Thalamus
THORACIC Thoracic
THROAT Throat
THYMUS Thymus
THYROID Thyroid
THYROID_PARATHYROID_GLAND Thyroid - Parathyroid Gland
TICK Tick
TISSUE Tissue
TOE Toe
TONGUE Tongue
TONSIL Tonsil
TOOTH Tooth
TRACHEA Trachea
TUMOUR Tumour
TURF Turf
UDDER Udder
ULCER Ulcer
UMBILICAL_ARTERY Umbilical Artery
UMBILICAL_CORD Umbilical Cord
UMBILICUS Umbilicus
UNSPECIFIED Unspecified Value.
URACHUS Urachus
URETER Ureter
URETHRA Urethra
URETHRAL_FOSSA Urethral Fossa
URETHRAL_ORIFICE urethral orifice
URETHRAL_PROCESS urethral process
URINE Urine
UROGENITAL Urogenital Swab
UTERUS Uterus
UTERUS_ENDOMETRIUM Uterus - Endometrium
VACCINE Vaccine
VAS_DEFERENS Vas deferens
VEGETABLE Vegetable
VEIN Vein
VEIN_JUGULAR Vein - Jugular
VEIN_PORTAL Vein - Portal
VEIN_POSTERIOR_VENA_CAVA Vein - Posterior Vena Cava
VERTEBRA Vertebra
VERTEBRAE_LUMBAR Vertebrae - lumbar
VERTEBRAE_SACRAL Vertebrae - Sacral
VERTEBRAE_THORACIC Vertebrae - Thoracic
VERTEBRAL_DISC Vertebral Disc
VERTEBRA_CERVICAL Vertebra - Cervical
VESICLE Vesicle
VIRUS Virus
VULVA Vulva
WART Wart
WATER Water
WHOLE_ANIMAL Whole Animal
WHOLE_BIRD Whole Bird
WHOLE_EMBRYOS Whole Embryos
WHOLE_FISH Whole fish
WHOLE_HEAD Whole Head
WING Wing
WOOL Wool