STARS Implementation Guide
0.1.0 - ci-build

STARS Implementation Guide - Local Development build (v0.1.0). See the Directory of published versions

Artifacts Summary

This page provides a list of the FHIR artifacts defined as part of this implementation guide.

Global profiles

There are no Global profiles defined

Structures: Resource Profiles

These define constraints on FHIR resources for systems conforming to this implementation guide.

CSIRO STARS DiagnosticReport Profile

Results returned through a Diagnostic Report

CSIRO STARS MessageHeader Profile

MessageHeader is used in bundles to assist directing to the correct destination

CSIRO STARS Observation Result Profile

Results, Measurements and simple assertions

CSIRO STARS Observation SupportingInfo Profile

Supporting Info Measurements and simple assertions

CSIRO STARS Organization Profile

An organization

CSIRO STARS Patient Profile

A patient, primarily animal

CSIRO STARS ServiceRequest Profile

A Service Request, no changes yet

CSIRO STARS Specimen Profile

A specimen / sample

Structures: Extension Definitions

These define constraints on FHIR data types for systems conforming to this implementation guide.

CSIRO STARS Patient Animal Profile

An animals species, breed and gender status

Is Human

Status of a speciemen is human or not

Submission Category

The submission category of the tests requested as per DAWE terminology regarding exotic diseases within Australia.

Terminology: Value Sets

These define sets of codes used by systems conforming to this implementation guide.

Specimen Type Value Set

Codes describing various specimen types from SNOMED-CT.

STARS Analysis Value Set

the thing to pick from

STARS Contact Entity Type Value Set

the thing to pick from

STARS Control Value Set

the thing to pick from

STARS Diagnosis Value Set

the thing to pick from

STARS Diagnostic Outcomes Value Set

the thing to pick from

STARS Laboratory Value Set

the thing to pick from

STARS Message Type Value Set

Message Types are used as MessageHeader events

STARS Operator Value Set

the thing to pick from

STARS Property Country Value Set

the thing to pick from

STARS Property State Value Set

the thing to pick from

STARS Sample Presentation Value Set

the thing to pick from

STARS Sample Type Value Set

the thing to pick from

STARS Species Group Value Set

the thing to pick from

STARS Species Value Set

the thing to pick from

STARS Submission Category Value Set

the thing to pick from

STARS Submitter Type Value Set

the thing to pick from

STARS Syndrome Value Set

the thing to pick from

Terminology: Code Systems

These define new code systems used by systems conforming to this implementation guide.

STARS Legacy Analysis Code System

Codes describing various Analysis.

STARS Legacy Contact Entity Type Code System

Codes describing various Contact Entitie Types.

STARS Legacy Control Code System

Codes describing various Control.

STARS Legacy Diagnosis Code System

Codes describing various Diagnosis.

STARS Legacy Diagnostic Outcomes Code System

Codes describing various Diagnostic Outcomes.

STARS Legacy Laboratory Code System

Codes describing various Laboratory.

STARS Legacy Message Type Code System

Codes describing various Message Type.

STARS Legacy Operator Code System

Codes describing various Operator.

STARS Legacy Property Country Code System

Codes describing various Property Country.

STARS Legacy Property State Code System

Codes describing various Property State.

STARS Legacy Sample Presentation Code System

Codes describing various Sample Presentation.

STARS Legacy Sample Type Code System

Codes describing various Sample Type.

STARS Legacy Species Code System

Codes describing various Species.

STARS Legacy Species Group Code System

Codes describing various Species Group.

STARS Legacy Submission Category Code System

Codes describing various Submission Category.

STARS Legacy Submitter Type Code System

Codes describing various Submitter Type.

STARS Legacy Syndrome Code System

Codes describing various Syndrome.

STARS Message Type Code System

Codes describing supported Message Type events.

Example: Example Instances

These are example instances that show what data produced and consumed by systems conforming with this implementation guide might look like.

10b430b6-1039-4af7-be30-83cdbdb055c6

Example of Patient - Deceased Grey-headed Flying Fox

1c01bb5c-55af-45e4-a088-a9f7e8cc9815

Specimen to be tested

85d72429-82e2-4199-b9e3-2124d43455c1

Example ServiceRequest for sending 1x samples to be tested for Lyssavirus exclusion within a bundle (cat 2)

8f56a3a6-0229-4fa2-9016-75d744eb0c2f

example message header as first entry in bundle

ACDP

Example organisation ACDP

ACDP-TEST01

Example organisation ACDP-TEST01 for send/receive

ACDP-TEST99

Example organisation ACDP-TEST99 for send/receive

Bat

Bat carcass submitted for rabies exclusion

bundle-example-cat3-cow

Example send diagnostic report (results) to source laboratory

bundle-example-cat3-cow-servicerequest

Example send service request (specimens) to destination laboratory for testing

bundle-qa-diagnosticreport

QA Bundle for DiagnosticReport Bundle

bundle-qa-servicerequest

QA Bundle for ServiceRequest Bundle

Client-Example-Organization

Example organisation Client

cow

Bovine samples submitted for FMD exclusion

diagnosticreport-example-cat3-bat

Example Diagnostic Report CAT3 Bat

diagnosticreport-example-cat3-cow

Example Diagnostic Report CAT3 Cow

documentreference-1-qa-diagnosticreport

QA DocumentReference for DiagnosticReport Bundle

DPIRD

Example organisation profile fro DPRID

DPIRD-servicerequest

Example organisation profile from DPRID for reporting and billing contacts

example-send-service-request

Example sending ServiceRrequest to destination laboratory to request testing of specimen

example-servicerequest

Example service request

MessageHeader-DiagnosticReport

example of DiagnosticReport message header

MessageHeader-ServiceRequest

example of ServiceRequest message header

observation-example-category3-bat-ABLVIn

Example Observation

observation-example-category3-bat-ABLVPt

Example Observation

observation-example-category3-bat-RABIESFAV

Example Observation

observation-example-category3-sample-1-FMDCE0

Example Observation of FMD_CE_0 analysis (1)

observation-example-category3-sample-1-FMDCEA

Example Observation of FMD_CE_A analysis (1)

observation-example-category3-sample-1-FMDCEAS1

Example Observation of FMD_CE_AS1 analysis (1)

observation-example-category3-sample-1-FMDVMPTQM

Example Observation of FMD_MP_TQM analysis (1)

observation-example-category3-sample-1-VSVSNTIN

Example Observation of VSV_SNT_IN analysis (1)

observation-example-category3-sample-1-VSVSNTNJ

Example Observation of VSV_SNT_NJ analysis (1)

observation-example-category3-sample-1-VSVTQMMP

Example Observation of VSV_TQM_MP analysis (1)

observation-example-category3-sample-2-FMDVMPTQM

Example Observation of FMD_MP_TQM analysis (2)

observation-example-category3-sample-2-VSVTQMMP

Example Observation of VSV_TQM_MP analysis (2)

observation-example-category3-sample-3-FMDVISO

Example Observation of FMD_ISO analysis (1)

observation-example-category3-sample-3-FMDVMPTQM

Example Observation of FMD_MP_TQM analysis (3)

observation-example-category3-sample-3-VSVISO

Example Observation of VSV_ISO analysis (1)

observation-example-category3-sample-3-VSVTQMMP

Example Observation of VSV_TQM_MP analysis (3)

observation-example-category3-sample-4-FMDVISO

Example Observation of FMD_ISO analysis (2)

observation-example-category3-sample-4-FMDVMPTQM

Example Observation of FMD_MP_TQM analysis (4)

observation-example-category3-sample-4-VSVISO

Example Observation of VSV_ISO analysis (2)

observation-example-category3-sample-4-VSVTQMMP

Example Observation of VSV_TQM_MP analysis (4)

organization-owner

Owner

practitioner-example

example-practitioner

servicerequest-example-cat3-cow

Example ServiceRequest for sending 4x bovine samples to be tested for FMD and VSV disease exclusion (cat 2)

Shorty

example patient entry

specimen-example

Example specimen

specimen-example-bat

Example bat specimen

specimen-example-EDTA-blood-sample-2

Example cow specimen

specimen-example-serum-sample-1

Serum sample taken from cow

specimen-example-swab-sample-3

Example swab specimen

specimen-example-swab-sample-4

Example swab specimen