STARS Implementation Guide
0.1.0 - ci-build
STARS Implementation Guide - Local Development build (v0.1.0). See the Directory of published versions
Bundle aa4dd75c-673b-4263-8c70-6e92fef4a48b of type message
Entry 1 - fullUrl = urn:uuid:43f763f5-e640-4038-82c9-3ebaa8ee594c
Resource MessageHeader:
Generated Narrative: MessageHeader
Resource MessageHeader "messageheader-example-cat3-cow-diagnosticreport"
Profile: CSIRO STARS MessageHeader Profile
Texts
- Div * <div/> event: DiagnosticReport (Details: https://acdp.csiro.au/starsapi-sandbox/fhir-ig/stars/CodeSystem/message-type-code-system code DiagnosticReport = 'DiagnosticReport', stated as 'null')
Destinations
- Endpoint Receiver * https://acdp.csiro.au/starsapi-sandbox/fhir Organization/ACDP-TEST99 "CSIRO ACDP-TEST99" sender: Organization/ACDP-TEST01 "CSIRO ACDP-TEST01"
Sources
- Endpoint * https://acdp.csiro.au/starsapi-sandbox/fhir focus: See above (urn:uuid:b669bffc-2e2a-402c-93d1-f10e6136f496)
Entry 2 - fullUrl = urn:uuid:b669bffc-2e2a-402c-93d1-f10e6136f496
Resource DiagnosticReport:
democode
Reported 2022-11-29 00:00:00+0000 Identifier: id: 22-00002 Report Details
Code Value Flags Note When For Reported Foot and Mouth Disease Virus Isolation Not detected Not detected The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV. 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Foot and Mouth Disease Virus Isolation Not detected Not detected The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV. 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Vesicular Stomatitis Virus Isolation Not detected Not detected 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Vesicular Stomatitis Virus Isolation Not detected Not detected 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay 45 Cycle Threshold Negative 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay 45 Cycle Threshold Negative 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay 45 Cycle Threshold Negative 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay 45 Cycle Threshold Negative 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay 45 Cycle Threshold Negative NATA accreditation does not cover the performance of this service. 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay 45 Cycle Threshold Negative NATA accreditation does not cover the performance of this service. 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay 45 Cycle Threshold Negative NATA accreditation does not cover the performance of this service. 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay 45 Cycle Threshold Negative NATA accreditation does not cover the performance of this service. 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Foot and Mouth Disease Serotype A: C ELISA for the Detection of Antibodies Not detected Not detected 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Foot and Mouth Disease Serotype Asia 1: C ELISA for Detection of Antibodies Not detected Not detected 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Foot and Mouth Disease Serotype O: C ELISA for the Detection of Antibodies Not detected Not detected 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Vesiculovirus Serum Neutralisation Test for Antibody for Serotype Indiana Not detected Not detected 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Vesiculovirus Serum Neutralisation Test for Antibody for Serotype New Jersey Not detected Not detected 2022-11-29 10:30:10+1000 2022-11-29 10:30:10+1000 Please note that insufficient sample volume was received to complete the FMD Antigen capture ELISA. In cases where vesicular epithelium is not available for submission, a minimum sample volume of 3 mL is required for all vesicular disease exclusion testing.
Entry 3 - fullUrl = urn:uuid:fcbef5c9-e7b9-4133-92aa-1e5f2c798c48
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-3-FMDVISO"
Texts
- Div * <div/> identifier: id: test3-fmdviso
status: FINAL
code: Foot and Mouth Disease Virus Isolation (STARS Legacy Analysis Code System#XV10082)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: Not detected
interpretation: Not detected (ObservationInterpretation#ND)
note: The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.
specimen: Specimen/specimen-example-swab-sample-3
Entry 4 - fullUrl = urn:uuid:20aceb62-6e6f-4a94-a432-b18b630921d9
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-4-FMDVISO"
Texts
- Div * <div/> identifier: id: test4-fmdviso
status: FINAL
code: Foot and Mouth Disease Virus Isolation (STARS Legacy Analysis Code System#XV10082)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: Not detected
interpretation: Not detected (ObservationInterpretation#ND)
note: The samples were inoculated onto BHK and LFBK cells and observed for CPE for 3 days for 2 passages. Pass 2 materials were further investigated by FMD Taqman PCR for the presence of FMDV.
specimen: Specimen/specimen-example-swab-sample-4
Entry 5 - fullUrl = urn:uuid:a39356e2-9e8b-4966-b2a3-a519db3112ad
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-3-VSVISO"
Texts
- Div * <div/> identifier: id: test3-vsviso
status: FINAL
code: Vesicular Stomatitis Virus Isolation (STARS Legacy Analysis Code System#XV10139)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: Not detected
interpretation: Not detected (ObservationInterpretation#ND)
specimen: Specimen/specimen-example-swab-sample-3
Entry 6 - fullUrl = urn:uuid:647c4bb8-6baa-46ad-ac87-ee956d331b9d
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-4-VSVISO"
Texts
- Div * <div/> identifier: id: test4-vsviso
status: FINAL
code: Vesicular Stomatitis Virus Isolation (STARS Legacy Analysis Code System#XV10139)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: Not detected
interpretation: Not detected (ObservationInterpretation#ND)
specimen: Specimen/specimen-example-swab-sample-4
Entry 7 - fullUrl = urn:uuid:95481e7c-2bdf-4ac9-bd59-ff22ed962b74
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-1-FMDVMPTQM"
Texts
- Div * <div/> identifier: id: test1-fmdvmptqm
status: FINAL
code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay (STARS Legacy Analysis Code System#XR10026)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: 45 Cycle Threshold (Details: UCUM code {Ct_value} = '{Ct_value}')
interpretation: Negative (ObservationInterpretation#NEG)
specimen: Specimen/specimen-example-serum-sample-1
Entry 8 - fullUrl = urn:uuid:5606726e-583f-4da4-a480-34bd43fcd82d
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-2-FMDVMPTQM"
Texts
- Div * <div/> identifier: id: test2-fmdvmptqm
status: FINAL
code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay (STARS Legacy Analysis Code System#XR10026)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: 45 Cycle Threshold (Details: UCUM code {Ct_value} = '{Ct_value}')
interpretation: Negative (ObservationInterpretation#NEG)
Entry 9 - fullUrl = urn:uuid:efc6dff0-6d0d-4781-ba75-36f60fb88475
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-3-FMDVMPTQM"
Texts
- Div * <div/> identifier: id: test3-fmdvmptqm
status: FINAL
code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay (STARS Legacy Analysis Code System#XR10026)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: 45 Cycle Threshold (Details: UCUM code {Ct_value} = '{Ct_value}')
interpretation: Negative (ObservationInterpretation#NEG)
specimen: Specimen/specimen-example-swab-sample-3
Entry 10 - fullUrl = urn:uuid:d21aec15-b559-41cd-9422-6bab3f80fda2
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-4-FMDVMPTQM"
Texts
- Div * <div/> identifier: id: test4-fmdvmptqm
status: FINAL
code: Foot and Mouth Disease - Multiplex Pirbright and Tetracore Assay RT - TaqMan Assay (STARS Legacy Analysis Code System#XR10026)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: 45 Cycle Threshold (Details: UCUM code {Ct_value} = '{Ct_value}')
interpretation: Negative (ObservationInterpretation#NEG)
specimen: Specimen/specimen-example-swab-sample-4
Entry 11 - fullUrl = urn:uuid:798660b3-84e3-4a9c-8970-800117eadb64
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-1-VSVTQMMP"
Texts
- Div * <div/> identifier: id: test1-vsvtqmmp
status: FINAL
code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay (STARS Legacy Analysis Code System#XR10078)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: 45 Cycle Threshold (Details: UCUM code {Ct_value} = '{Ct_value}')
interpretation: Negative (ObservationInterpretation#NEG)
note: NATA accreditation does not cover the performance of this service.
specimen: Specimen/specimen-example-serum-sample-1
Entry 12 - fullUrl = urn:uuid:c8251127-30f3-4363-929f-6763ce4f9528
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-2-VSVTQMMP"
Texts
- Div * <div/> identifier: id: test2-vsvtqmmp
status: FINAL
code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay (STARS Legacy Analysis Code System#XR10078)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: 45 Cycle Threshold (Details: UCUM code {Ct_value} = '{Ct_value}')
interpretation: Negative (ObservationInterpretation#NEG)
note: NATA accreditation does not cover the performance of this service.
Entry 13 - fullUrl = urn:uuid:388b33dd-fa80-487e-a5bd-d55740198f23
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-3-VSVTQMMP"
Texts
- Div * <div/> identifier: id: test3-vsvtqmmp
status: FINAL
code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay (STARS Legacy Analysis Code System#XR10078)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: 45 Cycle Threshold (Details: UCUM code {Ct_value} = '{Ct_value}')
interpretation: Negative (ObservationInterpretation#NEG)
note: NATA accreditation does not cover the performance of this service.
specimen: Specimen/specimen-example-swab-sample-3
Entry 14 - fullUrl = urn:uuid:76f99928-e324-4c8f-86db-1fdbb2803d23
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-4-VSVTQMMP"
Texts
- Div * <div/> identifier: id: test4-vsvtqmmp
status: FINAL
code: Vesicular Stomatitis Virus - Multiplex Indiana and New Jersey - TaqMan Assay (STARS Legacy Analysis Code System#XR10078)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: 45 Cycle Threshold (Details: UCUM code {Ct_value} = '{Ct_value}')
interpretation: Negative (ObservationInterpretation#NEG)
note: NATA accreditation does not cover the performance of this service.
specimen: Specimen/specimen-example-swab-sample-4
Entry 15 - fullUrl = urn:uuid:87505ee8-9b42-4106-ac09-d67082b7b7fc
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-1-FMDCEA"
Texts
- Div * <div/> identifier: id: test1-fmdcea
status: FINAL
code: Foot and Mouth Disease Serotype A: C ELISA for the Detection of Antibodies (STARS Legacy Analysis Code System#XE10027)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: Not detected
interpretation: Not detected (ObservationInterpretation#ND)
specimen: Specimen/specimen-example-serum-sample-1
Entry 16 - fullUrl = urn:uuid:4b2612f6-4ce0-4d20-b27c-a57ccfe3ca78
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-1-FMDCEAS1"
Texts
- Div * <div/> identifier: id: test1-fmdceas1
status: FINAL
code: Foot and Mouth Disease Serotype Asia 1: C ELISA for Detection of Antibodies (STARS Legacy Analysis Code System#XE10028)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: Not detected
interpretation: Not detected (ObservationInterpretation#ND)
specimen: Specimen/specimen-example-serum-sample-1
Entry 17 - fullUrl = urn:uuid:bff818b2-3a93-497a-b141-f79bc00ee3ea
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-1-FMDCE0"
Texts
- Div * <div/> identifier: id: test1-fmdce0
status: FINAL
code: Foot and Mouth Disease Serotype O: C ELISA for the Detection of Antibodies (STARS Legacy Analysis Code System#XE10030)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: Not detected
interpretation: Not detected (ObservationInterpretation#ND)
specimen: Specimen/specimen-example-serum-sample-1
Entry 18 - fullUrl = urn:uuid:455664c3-066a-46f0-8bba-6912876dd4e1
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-1-VSVSNTIN"
Texts
- Div * <div/> identifier: id: test1-vsvsntin
status: FINAL
code: Vesiculovirus Serum Neutralisation Test for Antibody for Serotype Indiana (STARS Legacy Analysis Code System#XN10045)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: Not detected
interpretation: Not detected (ObservationInterpretation#ND)
specimen: Specimen/specimen-example-serum-sample-1
Entry 19 - fullUrl = urn:uuid:b52a62ea-051f-434f-8bfb-4ccf14bfe348
Resource Observation:
Generated Narrative: Observation
Resource Observation "observation-example-category3-sample-1-VSVSNTNJ"
Texts
- Div * <div/> identifier: id: test1-vsvsntnj
status: FINAL
code: Vesiculovirus Serum Neutralisation Test for Antibody for Serotype New Jersey (STARS Legacy Analysis Code System#XN10046)
effective: 29 Nov 2022, 11:30:10 am
issued: 29 Nov 2022, 11:30:10 am
value: Not detected
interpretation: Not detected (ObservationInterpretation#ND)
specimen: Specimen/specimen-example-serum-sample-1